Zinc in PDB 8dav: Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties and One Unfolded Ubiquitin in Presence of Sumo- Ubiquitin(K48POLYUB)-Meos and Atp, State 2 (Uc)

Enzymatic activity of Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties and One Unfolded Ubiquitin in Presence of Sumo- Ubiquitin(K48POLYUB)-Meos and Atp, State 2 (Uc)

Zinc Binding Sites:

Zinc binding site 1 out of 2 in 8dav

Zinc Binding Sites List in 8dav

Zinc binding site 1 out of 2 in the Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties and One Unfolded Ubiquitin in Presence of Sumo- Ubiquitin(K48POLYUB)-Meos and Atp, State 2 (Uc)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties and One Unfolded Ubiquitin in Presence of Sumo- Ubiquitin(K48POLYUB)-Meos and Atp, State 2 (Uc) within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn601 b:95.8 occ:1.00 NE2 G:HIS139 2.0 63.5 1.0 SG G:CYS148 2.1 56.0 1.0 SG G:CYS137 2.2 78.0 1.0 SG G:CYS145 2.3 58.4 1.0 CD2 G:HIS139 2.8 63.5 1.0 CB G:CYS137 3.1 78.0 1.0 CE1 G:HIS139 3.1 63.5 1.0 N G:CYS145 3.3 58.4 1.0 CB G:CYS145 3.6 58.4 1.0 CB G:CYS148 3.7 56.0 1.0 CA G:CYS137 3.9 78.0 1.0 CG G:HIS139 4.0 63.5 1.0 CA G:CYS145 4.1 58.4 1.0 ND1 G:HIS139 4.1 63.5 1.0 CA G:MET144 4.2 52.2 1.0 C G:MET144 4.2 52.2 1.0 N G:CYS148 4.5 56.0 1.0 N G:GLU146 4.5 63.4 1.0 O G:GLY143 4.6 53.0 1.0 N G:TYR147 4.8 66.8 1.0 CA G:CYS148 4.8 56.0 1.0 N G:CYS137 4.8 78.0 1.0 C G:CYS145 4.8 58.4 1.0 CB G:MET144 4.9 52.2 1.0 C G:TYR147 5.0 66.8 1.0

Zinc binding site 2 out of 2 in 8dav

Zinc Binding Sites List in 8dav

Zinc binding site 2 out of 2 in the Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties and One Unfolded Ubiquitin in Presence of Sumo- Ubiquitin(K48POLYUB)-Meos and Atp, State 2 (Uc)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties and One Unfolded Ubiquitin in Presence of Sumo- Ubiquitin(K48POLYUB)-Meos and Atp, State 2 (Uc) within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn602 b:89.7 occ:1.00 NE2 G:HIS208 2.0 73.0 1.0 CE1 G:HIS208 2.1 73.0 1.0 SG G:CYS219 2.3 66.4 1.0 SG G:CYS216 2.3 61.1 1.0 SG G:CYS204 2.3 86.3 1.0 CB G:CYS219 3.0 66.4 1.0 N G:CYS216 3.1 61.1 1.0 CB G:CYS216 3.3 61.1 1.0 ND1 G:HIS208 3.4 73.0 1.0 CD2 G:HIS208 3.4 73.0 1.0 CA G:CYS216 3.7 61.1 1.0 CB G:CYS204 3.7 86.3 1.0 CG G:HIS208 4.0 73.0 1.0 C G:ILE215 4.1 56.1 1.0 CA G:CYS219 4.1 66.4 1.0 N G:CYS219 4.1 66.4 1.0 CA G:ILE215 4.2 56.1 1.0 C G:CYS216 4.4 61.1 1.0 O G:CYS216 4.6 61.1 1.0 O G:GLY207 4.8 84.7 1.0 CB G:ILE215 4.9 56.1 1.0 C G:CYS219 4.9 66.4 1.0 CG G:LYS218 5.0 76.5 1.0 CB G:ASN206 5.0 78.8 1.0

Reference: