Zinc in PDB 8dat: Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Three Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Intb)

All present enzymatic activity of Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Three Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Intb):
3.6.4.6;

The binding sites of Zinc atom in the Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Three Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Intb) (pdb code 8dat). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Three Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Intb), PDB code: 8dat:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Three Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Intb)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Three Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Intb) within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn601 b:101.8 occ:1.00 NE2 G:HIS139 2.0 87.7 1.0 SG G:CYS148 2.3 77.1 1.0 SG G:CYS137 2.3 85.6 1.0 SG G:CYS145 2.3 76.3 1.0 CD2 G:HIS139 2.8 87.7 1.0 CB G:CYS137 3.0 85.6 1.0 CE1 G:HIS139 3.1 87.7 1.0 N G:CYS145 3.4 76.3 1.0 CB G:CYS145 3.7 76.3 1.0 CB G:CYS148 3.7 77.1 1.0 CG G:HIS139 4.0 87.7 1.0 CA G:CYS137 4.0 85.6 1.0 CA G:CYS145 4.1 76.3 1.0 ND1 G:HIS139 4.1 87.7 1.0 N G:CYS148 4.2 77.1 1.0 C G:MET144 4.3 73.7 1.0 CA G:MET144 4.3 73.7 1.0 N G:GLU146 4.5 78.4 1.0 CA G:CYS148 4.6 77.1 1.0 N G:TYR147 4.7 78.1 1.0 O G:GLY143 4.8 70.7 1.0 C G:CYS145 4.8 76.3 1.0 CD2 G:TYR147 5.0 78.1 1.0 C G:CYS137 5.0 85.6 1.0 N G:LYS138 5.0 94.7 1.0

Zinc binding site 2 out of 2 in the Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Three Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Intb)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Three Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Intb) within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn602 b:112.9 occ:1.00 NE2 G:HIS208 2.0 97.9 1.0 SG G:CYS216 2.2 82.2 1.0 SG G:CYS219 2.3 80.8 1.0 SG G:CYS204 2.3 100.3 1.0 CB G:CYS204 2.7 100.3 1.0 CD2 G:HIS208 2.9 97.9 1.0 CE1 G:HIS208 3.0 97.9 1.0 CB G:CYS219 3.3 80.8 1.0 CB G:CYS216 3.6 82.2 1.0 N G:CYS219 3.8 80.8 1.0 N G:CYS216 4.0 82.2 1.0 ND1 G:HIS208 4.0 97.9 1.0 CG G:HIS208 4.0 97.9 1.0 CA G:CYS204 4.1 100.3 1.0 CA G:CYS219 4.1 80.8 1.0 N G:HIS205 4.2 116.2 1.0 CA G:CYS216 4.3 82.2 1.0 C G:CYS204 4.4 100.3 1.0 C G:LYS218 4.6 86.5 1.0 CB G:LYS218 4.6 86.5 1.0 C G:CYS216 4.7 82.2 1.0 N G:LYS218 4.8 86.5 1.0 N G:ASN206 4.8 104.8 1.0 ND2 G:ASN206 4.8 104.8 1.0 N G:CYS204 4.8 100.3 1.0 O G:CYS216 4.9 82.2 1.0 CA G:LYS218 4.9 86.5 1.0 C G:CYS219 5.0 80.8 1.0

H.G.Lee, A.A.Lemmon, C.D.Lima. UFD1 Interactions with Sumo Enhance Unfolding of Sumo-Polyubiquitin-Conjugated Substrates By the UFD1/NPL4/CDC48 Complex To Be Published.