Zinc in PDB 8das: Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Inta)

All present enzymatic activity of Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Inta):
3.6.4.6;

The binding sites of Zinc atom in the Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Inta) (pdb code 8das). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Inta), PDB code: 8das:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Inta)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Inta) within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn601 b:83.3 occ:1.00 NE2 G:HIS139 2.0 71.9 1.0 SG G:CYS148 2.2 62.9 1.0 SG G:CYS137 2.2 76.0 1.0 SG G:CYS145 2.3 61.4 1.0 CD2 G:HIS139 2.8 71.9 1.0 CB G:CYS137 3.1 76.0 1.0 CE1 G:HIS139 3.2 71.9 1.0 N G:CYS145 3.4 61.4 1.0 CB G:CYS148 3.6 62.9 1.0 CB G:CYS145 3.7 61.4 1.0 CA G:CYS137 4.0 76.0 1.0 CG G:HIS139 4.1 71.9 1.0 N G:CYS148 4.1 62.9 1.0 ND1 G:HIS139 4.2 71.9 1.0 CA G:CYS145 4.2 61.4 1.0 CA G:MET144 4.2 57.2 1.0 C G:MET144 4.3 57.2 1.0 CA G:CYS148 4.5 62.9 1.0 N G:GLU146 4.7 67.3 1.0 N G:TYR147 4.8 64.8 1.0 O G:GLY143 4.8 56.1 1.0 CB G:MET144 4.9 57.2 1.0 C G:CYS137 5.0 76.0 1.0 C G:CYS145 5.0 61.4 1.0 N G:CYS137 5.0 76.0 1.0

Zinc binding site 2 out of 2 in the Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Inta)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Saccharomyces Cerevisiae UFD1/NPL4/CDC48 Complex Bound to Two Ubiquitin Moieties in Presence of Sumo-Ubiquitin(K48POLYUB)-Meos and Atp, State 1 (Inta) within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn602 b:90.7 occ:1.00 NE2 G:HIS208 2.0 80.5 1.0 SG G:CYS216 2.2 68.0 1.0 SG G:CYS219 2.2 67.5 1.0 SG G:CYS204 2.3 85.1 1.0 CB G:CYS204 2.8 85.1 1.0 CE1 G:HIS208 2.9 80.5 1.0 CD2 G:HIS208 2.9 80.5 1.0 CB G:CYS219 3.2 67.5 1.0 CB G:CYS216 3.6 68.0 1.0 N G:CYS219 3.7 67.5 1.0 ND1 G:HIS208 3.9 80.5 1.0 N G:CYS216 3.9 68.0 1.0 CG G:HIS208 3.9 80.5 1.0 CA G:CYS219 4.1 67.5 1.0 CA G:CYS204 4.2 85.1 1.0 N G:HIS205 4.2 93.4 1.0 CA G:CYS216 4.3 68.0 1.0 C G:CYS204 4.4 85.1 1.0 C G:LYS218 4.5 71.6 1.0 CB G:LYS218 4.6 71.6 1.0 N G:ASN206 4.6 85.2 1.0 C G:CYS216 4.8 68.0 1.0 N G:LYS218 4.8 71.6 1.0 CA G:LYS218 4.9 71.6 1.0 C G:CYS219 4.9 67.5 1.0 OD1 G:ASN206 4.9 85.2 1.0 N G:CYS204 5.0 85.1 1.0

H.G.Lee, A.A.Lemmon, C.D.Lima. UFD1 Interactions with Sumo Enhance Unfolding of Sumo-Polyubiquitin-Conjugated Substrates By the UFD1/NPL4/CDC48 Complex To Be Published.