Zinc in PDB 8d9g: Gramp-Tpr-Chat Non Match Pfs Target Rna(Craspase)

The binding sites of Zinc atom in the Gramp-Tpr-Chat Non Match Pfs Target Rna(Craspase) (pdb code 8d9g). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Gramp-Tpr-Chat Non Match Pfs Target Rna(Craspase), PDB code: 8d9g:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Gramp-Tpr-Chat Non Match Pfs Target Rna(Craspase)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Gramp-Tpr-Chat Non Match Pfs Target Rna(Craspase) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1701 b:90.2 occ:1.00 SG B:CYS125 2.4 57.5 1.0 SG B:CYS116 2.4 87.2 1.0 SG B:CYS83 2.5 70.2 1.0 CB B:CYS83 2.5 70.2 1.0 CB B:CYS122 2.6 70.0 1.0 SG B:CYS122 2.7 70.0 1.0 CB B:CYS116 3.5 87.2 1.0 N B:CYS83 3.6 70.2 1.0 CA B:CYS83 3.6 70.2 1.0 N B:CYS122 3.7 70.0 1.0 CA B:CYS122 3.7 70.0 1.0 CB B:CYS125 3.8 57.5 1.0 SG B:CYS82 4.1 69.5 1.0 N B:CYS125 4.5 57.5 1.0 C B:CYS83 4.8 70.2 1.0 CA B:CYS125 4.8 57.5 1.0 C B:CYS122 4.8 70.0 1.0 C B:CYS82 4.9 69.5 1.0 CA B:CYS116 4.9 87.2 1.0 NH2 B:ARG130 4.9 57.7 1.0 C B:ALA121 5.0 78.4 1.0

Zinc binding site 2 out of 4 in the Gramp-Tpr-Chat Non Match Pfs Target Rna(Craspase)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Gramp-Tpr-Chat Non Match Pfs Target Rna(Craspase) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1702 b:75.3 occ:1.00 SG B:CYS501 2.3 37.3 1.0 CB B:CYS498 2.4 42.5 1.0 SG B:CYS496 2.4 40.9 1.0 SG B:CYS486 2.4 45.0 1.0 SG B:CYS498 2.8 42.5 1.0 N B:CYS498 3.2 42.5 1.0 CB B:CYS501 3.2 37.3 1.0 CA B:CYS498 3.3 42.5 1.0 CB B:CYS496 3.6 40.9 1.0 N B:CYS501 4.1 37.3 1.0 CB B:CYS486 4.2 45.0 1.0 C B:CYS498 4.3 42.5 1.0 CA B:CYS501 4.3 37.3 1.0 C B:CYS496 4.4 40.9 1.0 C B:ASN497 4.4 39.8 1.0 N B:ASN497 4.4 39.8 1.0 O B:CYS498 4.4 42.5 1.0 CA B:CYS496 4.6 40.9 1.0 N B:CYS486 4.6 45.0 1.0 O B:CYS496 4.7 40.9 1.0 CA B:ASN497 4.9 39.8 1.0

Zinc binding site 3 out of 4 in the Gramp-Tpr-Chat Non Match Pfs Target Rna(Craspase)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Gramp-Tpr-Chat Non Match Pfs Target Rna(Craspase) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1703 b:105.0 occ:1.00 ND1 B:HIS742 2.0 78.0 1.0 SG B:CYS747 2.2 55.2 1.0 CB B:CYS745 2.2 70.0 1.0 CE1 B:HIS742 2.5 78.0 1.0 SG B:CYS745 3.2 70.0 1.0 CG B:HIS742 3.3 78.0 1.0 CA B:CYS745 3.6 70.0 1.0 NE2 B:HIS742 3.8 78.0 1.0 CB B:CYS747 3.9 55.2 1.0 CB B:HIS742 4.0 78.0 1.0 O B:ASP741 4.1 88.4 1.0 CA B:HIS742 4.1 78.0 1.0 NZ B:LYS739 4.2 73.2 1.0 CD2 B:HIS742 4.2 78.0 1.0 C B:CYS745 4.2 70.0 1.0 SG B:CYS750 4.3 41.9 1.0 CA B:CYS747 4.6 55.2 1.0 N B:THR746 4.6 60.9 1.0 N B:CYS747 4.6 55.2 1.0 N B:CYS745 4.6 70.0 1.0 CE B:LYS739 4.8 73.2 1.0 O B:CYS745 4.9 70.0 1.0 C B:ASP741 5.0 88.4 1.0

Zinc binding site 4 out of 4 in the Gramp-Tpr-Chat Non Match Pfs Target Rna(Craspase)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Gramp-Tpr-Chat Non Match Pfs Target Rna(Craspase) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1704 b:95.5 occ:1.00 SG B:CYS1409 2.2 59.4 1.0 SG B:CYS1401 2.2 68.3 1.0 SG B:CYS1013 2.3 65.2 1.0 SG B:CYS1412 2.3 55.4 1.0 CB B:CYS1412 2.8 55.4 1.0 CB B:CYS1401 3.2 68.3 1.0 CB B:CYS1409 3.5 59.4 1.0 CB B:CYS1013 3.6 65.2 1.0 N B:CYS1401 3.7 68.3 1.0 N B:CYS1412 4.0 55.4 1.0 CA B:CYS1412 4.0 55.4 1.0 CA B:CYS1401 4.1 68.3 1.0 N B:CYS1409 4.1 59.4 1.0 N B:CYS1013 4.2 65.2 1.0 CA B:CYS1409 4.4 59.4 1.0 CA B:CYS1013 4.5 65.2 1.0 C B:PRO1400 4.8 70.5 1.0 O B:CYS1409 4.9 59.4 1.0 NH2 B:ARG930 4.9 66.4 1.0 C B:CYS1409 4.9 59.4 1.0 CA B:PRO1400 4.9 70.5 1.0

C.Hu, S.P.B.Van Beljouw, K.H.Nam, G.Schuler, F.Ding, Y.Cui, A.Rodriguez-Molina, A.C.Haagsma, M.Valk, M.Pabst, S.J.J.Brouns, A.Ke. Craspase Is A Crispr Rna-Guided, Rna-Activated Protease. Science V. 377 1278 2022.
ISSN: ESSN 1095-9203
PubMed: 36007061
DOI: 10.1126/SCIENCE.ADD5064