Zinc in PDB 8d9f: Gramp-Tpr-Chat (Craspase)

The binding sites of Zinc atom in the Gramp-Tpr-Chat (Craspase) (pdb code 8d9f). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Gramp-Tpr-Chat (Craspase), PDB code: 8d9f:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Gramp-Tpr-Chat (Craspase)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Gramp-Tpr-Chat (Craspase) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1701 b:181.8 occ:1.00 SG B:CYS125 2.3 125.5 1.0 SG B:CYS122 2.3 130.6 1.0 SG B:CYS83 2.3 133.4 1.0 SG B:CYS116 2.3 155.7 1.0 CB B:CYS125 3.2 125.5 1.0 CB B:CYS116 3.3 155.7 1.0 CB B:CYS122 3.4 130.6 1.0 CB B:CYS83 3.4 133.4 1.0 N B:CYS122 3.8 130.6 1.0 N B:CYS125 4.1 125.5 1.0 N B:CYS83 4.1 133.4 1.0 CA B:CYS122 4.1 130.6 1.0 CA B:CYS125 4.2 125.5 1.0 CA B:CYS83 4.3 133.4 1.0 O B:CYS122 4.7 130.6 1.0 NH1 B:ARG130 4.7 129.8 1.0 CA B:CYS116 4.7 155.7 1.0 C B:CYS122 4.8 130.6 1.0 C B:CYS83 4.8 133.4 1.0 N B:GLY85 4.9 122.5 1.0 C B:ALA121 4.9 139.4 1.0

Zinc binding site 2 out of 4 in the Gramp-Tpr-Chat (Craspase)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Gramp-Tpr-Chat (Craspase) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1702 b:183.3 occ:1.00 SG B:CYS498 2.3 121.8 1.0 SG B:CYS486 2.3 127.4 1.0 SG B:CYS501 2.3 119.0 1.0 SG B:CYS496 2.3 118.9 1.0 CB B:CYS501 2.7 119.0 1.0 CB B:CYS496 3.5 118.9 1.0 CB B:CYS486 3.8 127.4 1.0 CB B:CYS498 3.9 121.8 1.0 CA B:CYS501 4.0 119.0 1.0 N B:CYS501 4.2 119.0 1.0 N B:CYS498 4.6 121.8 1.0 N B:CYS486 4.6 127.4 1.0 NH1 B:ARG475 4.6 105.0 1.0 CA B:CYS496 4.7 118.9 1.0 CA B:CYS486 4.7 127.4 1.0 C B:CYS496 4.7 118.9 1.0 O B:CYS496 4.8 118.9 1.0 CA B:CYS498 4.8 121.8 1.0 O B:CYS498 4.8 121.8 1.0 O B:CYS486 5.0 127.4 1.0

Zinc binding site 3 out of 4 in the Gramp-Tpr-Chat (Craspase)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Gramp-Tpr-Chat (Craspase) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1703 b:184.7 occ:1.00 ND1 B:HIS742 2.0 155.4 1.0 SG B:CYS747 2.3 140.8 1.0 SG B:CYS745 2.3 150.4 1.0 SG B:CYS750 2.3 136.3 1.0 CE1 B:HIS742 2.6 155.4 1.0 CB B:CYS747 2.7 140.8 1.0 CB B:CYS750 3.0 136.3 1.0 CB B:CYS745 3.2 150.4 1.0 CG B:HIS742 3.2 155.4 1.0 N B:CYS747 3.8 140.8 1.0 N B:CYS750 3.8 136.3 1.0 NE2 B:HIS742 3.8 155.4 1.0 CA B:CYS747 3.9 140.8 1.0 CB B:HIS742 3.9 155.4 1.0 CE B:LYS739 4.0 152.0 1.0 CA B:CYS750 4.0 136.3 1.0 CD2 B:HIS742 4.1 155.4 1.0 C B:CYS745 4.4 150.4 1.0 CA B:CYS745 4.4 150.4 1.0 NZ B:LYS739 4.5 152.0 1.0 N B:THR746 4.6 144.1 1.0 CA B:HIS742 4.6 155.4 1.0 O B:CYS745 4.7 150.4 1.0 C B:THR746 4.7 144.1 1.0 C B:CYS747 4.8 140.8 1.0 C B:MET749 5.0 131.8 1.0

Zinc binding site 4 out of 4 in the Gramp-Tpr-Chat (Craspase)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Gramp-Tpr-Chat (Craspase) within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1704 b:198.9 occ:1.00 SG B:CYS1409 2.3 162.6 1.0 SG B:CYS1013 2.3 179.4 1.0 SG B:CYS1412 2.3 153.8 1.0 SG B:CYS1401 2.3 176.1 1.0 CB B:CYS1412 3.1 153.8 1.0 CB B:CYS1409 3.2 162.6 1.0 CB B:CYS1401 3.4 176.1 1.0 CB B:CYS1013 3.4 179.4 1.0 N B:CYS1401 3.6 176.1 1.0 N B:CYS1409 3.9 162.6 1.0 N B:CYS1412 4.1 153.8 1.0 CA B:CYS1409 4.1 162.6 1.0 CA B:CYS1412 4.1 153.8 1.0 CA B:CYS1401 4.1 176.1 1.0 N B:CYS1013 4.3 179.4 1.0 CA B:CYS1013 4.4 179.4 1.0 NH1 B:ARG930 4.5 171.9 1.0 C B:PRO1400 4.7 182.2 1.0 O B:CYS1409 4.8 162.6 1.0 C B:CYS1409 4.8 162.6 1.0 CA B:PRO1400 4.8 182.2 1.0 C B:CYS1013 5.0 179.4 1.0

C.Hu, S.P.B.Van Beljouw, K.H.Nam, G.Schuler, F.Ding, Y.Cui, A.Rodriguez-Molina, A.C.Haagsma, M.Valk, M.Pabst, S.J.J.Brouns, A.Ke. Craspase Is A Crispr Rna-Guided, Rna-Activated Protease. Science V. 377 1278 2022.
ISSN: ESSN 1095-9203
PubMed: 36007061
DOI: 10.1126/SCIENCE.ADD5064