Zinc in PDB 8d9e: Gramp-Match Pfs Target

The binding sites of Zinc atom in the Gramp-Match Pfs Target (pdb code 8d9e). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Gramp-Match Pfs Target, PDB code: 8d9e:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Gramp-Match Pfs Target


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Gramp-Match Pfs Target within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1701 b:211.3 occ:1.00 SG B:CYS116 2.2 201.2 1.0 CB B:CYS83 2.3 202.9 1.0 SG B:CYS125 2.6 182.8 1.0 O B:CYS83 2.9 202.9 1.0 CA B:CYS83 3.0 202.9 1.0 C B:CYS83 3.0 202.9 1.0 N B:CYS83 3.2 202.9 1.0 SG B:CYS83 3.4 202.9 1.0 CB B:CYS116 3.5 201.2 1.0 CB B:CYS125 3.6 182.8 1.0 C B:ILE115 3.7 205.8 1.0 O B:ILE115 3.7 205.8 1.0 N B:CYS116 3.8 201.2 1.0 N B:CYS125 3.9 182.8 1.0 N B:ASN84 4.0 201.1 1.0 CA B:CYS116 4.2 201.2 1.0 CA B:ILE115 4.3 205.8 1.0 CA B:CYS125 4.3 182.8 1.0 CB B:PHE124 4.4 177.6 1.0 N B:GLY85 4.4 199.2 1.0 C B:CYS82 4.5 196.2 1.0 SG B:CYS82 4.5 196.2 1.0 C B:ASN84 4.6 201.1 1.0 CD2 B:PHE124 4.8 177.6 1.0 CB B:CYS122 4.8 188.0 1.0 C B:PHE124 4.8 177.6 1.0 CG2 B:ILE115 4.9 205.8 1.0 CA B:ASN84 4.9 201.1 1.0 CA B:GLY85 4.9 199.2 1.0 O B:CYS122 5.0 188.0 1.0

Zinc binding site 2 out of 4 in the Gramp-Match Pfs Target


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Gramp-Match Pfs Target within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1702 b:143.3 occ:1.00 SG B:CYS486 2.3 129.9 1.0 SG B:CYS498 2.4 112.3 1.0 SG B:CYS496 2.4 120.9 1.0 CB B:CYS486 2.4 129.9 1.0 SG B:CYS501 2.5 104.0 1.0 CB B:CYS496 2.6 120.9 1.0 O B:CYS496 3.6 120.9 1.0 CB B:CYS501 3.8 104.0 1.0 CA B:CYS486 3.9 129.9 1.0 CA B:CYS496 3.9 120.9 1.0 CB B:CYS498 4.0 112.3 1.0 C B:CYS496 4.1 120.9 1.0 C B:CYS486 4.3 129.9 1.0 O B:CYS486 4.5 129.9 1.0 N B:CYS501 4.6 104.0 1.0 N B:CYS498 4.7 112.3 1.0 CA B:CYS501 4.8 104.0 1.0 N B:CYS496 4.8 120.9 1.0 N B:CYS486 4.8 129.9 1.0 CA B:CYS498 4.9 112.3 1.0

Zinc binding site 3 out of 4 in the Gramp-Match Pfs Target


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Gramp-Match Pfs Target within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1703 b:182.3 occ:1.00 CB B:CYS745 2.3 146.8 1.0 SG B:CYS750 2.4 110.6 1.0 SG B:CYS745 2.5 146.8 1.0 NE2 B:HIS742 2.6 155.5 1.0 CD2 B:HIS742 2.6 155.5 1.0 CE1 B:HIS742 2.9 155.5 1.0 CG B:HIS742 3.0 155.5 1.0 ND1 B:HIS742 3.2 155.5 1.0 CA B:CYS745 3.7 146.8 1.0 O B:HIS742 3.9 155.5 1.0 CA B:HIS742 3.9 155.5 1.0 CB B:HIS742 4.0 155.5 1.0 CB B:CYS750 4.1 110.6 1.0 C B:CYS745 4.2 146.8 1.0 N B:CYS745 4.3 146.8 1.0 SG B:CYS747 4.4 125.6 1.0 C B:HIS742 4.4 155.5 1.0 O B:CYS745 4.7 146.8 1.0 N B:THR746 4.8 138.2 1.0 O B:ASP741 4.8 150.1 1.0 CE B:MET749 4.8 111.3 1.0 CA B:CYS750 4.8 110.6 1.0 N B:CYS750 4.9 110.6 1.0

Zinc binding site 4 out of 4 in the Gramp-Match Pfs Target


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Gramp-Match Pfs Target within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1704 b:138.8 occ:1.00 SG B:CYS1406 2.0 106.3 1.0 SG B:CYS1417 2.1 87.6 1.0 SG B:CYS1018 2.1 97.0 1.0 SG B:CYS1414 2.2 93.9 1.0 CB B:CYS1406 3.3 106.3 1.0 CB B:CYS1417 3.3 87.6 1.0 CB B:CYS1018 3.5 97.0 1.0 CB B:CYS1414 3.5 93.9 1.0 N B:CYS1406 4.1 106.3 1.0 N B:CYS1417 4.2 87.6 1.0 CA B:CYS1406 4.3 106.3 1.0 N B:CYS1414 4.4 93.9 1.0 CA B:CYS1417 4.4 87.6 1.0 CA B:CYS1414 4.5 93.9 1.0 CA B:CYS1018 4.6 97.0 1.0 N B:CYS1018 4.6 97.0 1.0 O B:CYS1414 4.7 93.9 1.0 O B:CYS1018 4.8 97.0 1.0 C B:CYS1414 4.9 93.9 1.0 C B:CYS1018 5.0 97.0 1.0

C.Hu, S.P.B.Van Beljouw, K.H.Nam, G.Schuler, F.Ding, Y.Cui, A.Rodriguez-Molina, A.C.Haagsma, M.Valk, M.Pabst, S.J.J.Brouns, A.Ke. Craspase Is A Crispr Rna-Guided, Rna-Activated Protease. Science V. 377 1278 2022.
ISSN: ESSN 1095-9203
PubMed: 36007061
DOI: 10.1126/SCIENCE.ADD5064