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Zinc in PDB 8d52: Parathyroid Hormone 1 Receptor Extracellular Domain Complexed with A Peptide Ligand Containing (2-Naphthyl)-Beta-3-Homoalanine

Protein crystallography data

The structure of Parathyroid Hormone 1 Receptor Extracellular Domain Complexed with A Peptide Ligand Containing (2-Naphthyl)-Beta-3-Homoalanine, PDB code: 8d52 was solved by Z.Yu, D.F.Kreitler, S.H.Gellman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.30 / 2.02
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 57.383, 57.383, 205.208, 90, 90, 120
R / Rfree (%) 20.4 / 24.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Parathyroid Hormone 1 Receptor Extracellular Domain Complexed with A Peptide Ligand Containing (2-Naphthyl)-Beta-3-Homoalanine (pdb code 8d52). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Parathyroid Hormone 1 Receptor Extracellular Domain Complexed with A Peptide Ligand Containing (2-Naphthyl)-Beta-3-Homoalanine, PDB code: 8d52:

Zinc binding site 1 out of 1 in 8d52

Go back to Zinc Binding Sites List in 8d52
Zinc binding site 1 out of 1 in the Parathyroid Hormone 1 Receptor Extracellular Domain Complexed with A Peptide Ligand Containing (2-Naphthyl)-Beta-3-Homoalanine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Parathyroid Hormone 1 Receptor Extracellular Domain Complexed with A Peptide Ligand Containing (2-Naphthyl)-Beta-3-Homoalanine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn101

b:24.9
occ:0.33
O B:HOH208 2.0 42.6 0.3
NE2 B:HIS26 2.0 26.6 1.0
CE1 B:HIS26 3.0 30.4 1.0
CD2 B:HIS26 3.1 31.8 1.0
ND1 B:HIS26 4.1 27.4 1.0
CG B:HIS26 4.2 31.0 1.0
O A:HOH332 4.2 49.7 1.0
O B:PHE22 4.7 25.6 1.0

Reference:

Z.Yu, D.F.Kreitler, S.H.Gellman. Parathyroid Hormone 1 Receptor Extracellular Domain Complexed with A Peptide Ligand Containing (2-Naphthyl)-Beta-3-Homoalanine To Be Published.
Page generated: Fri Aug 22 09:06:42 2025

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