Zinc in PDB 8chy: Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc.

The structure of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc., PDB code: 8chy was solved by M.Liutkus, A.L.Rojas, A.L.Cortajarena, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.92 / 2.00
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	74.1, 74.1, 238.35, 90, 90, 120
R / Rfree (%)	20.4 / 24.9

The structure of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc. also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Zinc atom in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc. (pdb code 8chy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 13 binding sites of Zinc where determined in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc., PDB code: 8chy:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 13 in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:123.0 occ:1.00 OD1 A:ASP18 2.0 101.0 1.0 O A:HOH426 2.5 82.4 1.0 OD1 A:ASP16 2.7 85.4 1.0 CG A:ASP18 3.0 81.3 1.0 OE1 A:GLU19 3.0 77.9 1.0 CG A:ASP16 3.3 79.2 1.0 OD2 A:ASP18 3.4 101.3 1.0 OD2 A:ASP16 3.6 95.2 1.0 CD A:GLU19 4.1 79.3 1.0 CB A:ASP18 4.3 67.0 1.0 CA A:ASP16 4.5 59.9 1.0 CB A:ASP16 4.5 65.5 1.0 OE2 A:GLU19 4.5 91.2 1.0 N A:ASP18 4.7 50.0 1.0 C A:ASP16 4.7 48.5 1.0 N A:GLU19 4.8 54.4 1.0 N A:TYR17 4.9 48.8 1.0 CA A:ASP18 5.0 57.1 1.0

Zinc binding site 2 out of 13 in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:99.8 occ:1.00 OD2 A:ASP31 2.8 79.0 1.0 CG A:ASP31 3.6 81.4 1.0 OD1 A:ASP31 3.7 71.6 1.0 NH2 A:ARG33 3.9 107.0 1.0 CZ A:ARG33 4.4 101.7 1.0 CB A:ARG33 4.5 74.1 1.0 NH1 A:ARG33 4.8 86.9 1.0 NE A:ARG33 4.9 103.1 1.0

Zinc binding site 3 out of 13 in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn303 b:39.3 occ:0.50 O A:HOH408 1.8 40.5 1.0 OD1 A:ASP52 2.0 37.2 1.0 OE1 A:GLU53 2.0 52.9 1.0 CG A:ASP52 2.6 37.9 1.0 OD2 A:ASP52 2.6 41.8 1.0 CD A:GLU53 2.7 49.3 1.0 OE2 A:GLU53 2.8 59.6 1.0 OD1 A:ASP50 3.9 60.6 1.0 O A:HOH420 4.1 66.9 1.0 CB A:ASP52 4.1 39.1 1.0 CG A:GLU53 4.2 45.0 1.0 N A:GLU53 4.2 36.6 1.0 O A:HOH401 4.3 65.5 1.0 CB A:ASP50 4.3 45.8 1.0 CG A:ASP50 4.5 55.4 1.0 CA A:ASP50 4.5 37.9 1.0 N A:ASP52 4.6 36.0 1.0 C A:ASP50 4.7 37.1 1.0 CA A:ASP52 4.7 36.4 1.0 CB A:GLU53 4.8 38.4 1.0 C A:ASP52 4.9 34.3 1.0

Zinc binding site 4 out of 13 in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn304 b:34.7 occ:0.50 OD2 A:ASP65 2.1 49.4 1.0 CG A:ASP65 2.8 46.1 1.0 OD1 A:ASP65 2.8 46.9 1.0 ZN A:ZN305 3.3 58.5 1.0 C A:ARG67 4.1 45.2 1.0 O A:ARG67 4.2 40.7 1.0 N A:SER68 4.2 40.8 1.0 CB A:ASP65 4.3 43.6 1.0 CA A:SER68 4.5 41.3 1.0 CB A:ARG67 4.7 46.9 1.0 CA A:ARG67 4.8 46.8 1.0 CB A:SER68 4.9 40.2 1.0

Zinc binding site 5 out of 13 in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn305 b:58.5 occ:1.00 O A:HOH405 2.4 41.9 1.0 ZN A:ZN304 3.3 34.7 0.5 OE1 A:GLU70 4.0 51.6 1.0 O A:ARG67 4.2 40.7 1.0 OE2 A:GLU70 4.4 82.1 1.0 CA A:SER68 4.5 41.3 1.0 CD A:GLU70 4.6 66.1 1.0 OD2 A:ASP65 4.7 49.4 1.0 C A:ARG67 4.9 45.2 1.0

Zinc binding site 6 out of 13 in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn306 b:97.3 occ:0.75 OE1 A:GLU87 2.2 61.4 1.0 OD1 A:ASP86 2.4 77.7 1.0 CD A:GLU87 3.0 64.1 1.0 OE2 A:GLU87 3.0 81.2 1.0 CG A:ASP86 3.3 71.8 1.0 OD2 A:ASP86 3.5 97.7 1.0 OD1 A:ASP84 3.6 50.1 1.0 CB A:ASP84 4.1 40.1 1.0 CA A:ASP84 4.2 36.5 1.0 CG A:ASP84 4.3 42.9 1.0 CG A:GLU87 4.4 51.4 1.0 N A:GLU87 4.5 40.1 1.0 C A:ASP84 4.5 40.7 1.0 N A:ASP86 4.7 41.2 1.0 CB A:ASP86 4.7 51.7 1.0 N A:TYR85 4.9 37.7 1.0 O A:ASP84 5.0 35.1 1.0

Zinc binding site 7 out of 13 in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn307 b:109.6 occ:0.50 OD1 A:ASP118 2.8 85.8 1.0 OD2 A:ASP120 3.5 78.2 1.0 ZN A:ZN308 3.7 114.6 1.0 CG A:ASP118 3.7 73.9 1.0 CA A:ASP118 3.8 53.0 1.0 ZN A:ZN312 3.8 118.1 0.5 CB A:ASP118 3.9 63.4 1.0 OD1 A:ASP120 4.0 84.5 1.0 O A:GLY117 4.1 63.9 1.0 CG A:ASP120 4.1 79.2 1.0 OE1 A:GLU121 4.5 80.8 1.0 N A:ASP118 4.6 55.0 1.0 C A:GLY117 4.6 55.0 1.0 C A:ASP118 4.8 48.2 1.0 OD2 A:ASP118 4.9 89.8 1.0 N A:TYR119 4.9 51.9 1.0

Zinc binding site 8 out of 13 in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn308 b:114.6 occ:1.00 OD2 A:ASP120 2.6 78.2 1.0 OE1 A:GLU121 2.6 80.8 1.0 CG A:ASP120 2.7 79.2 1.0 OD1 A:ASP120 3.0 84.5 1.0 CD A:GLU121 3.2 81.8 1.0 OE2 A:GLU121 3.4 90.5 1.0 CB A:ASP120 3.7 68.3 1.0 ZN A:ZN307 3.7 109.6 0.5 ZN A:ZN312 3.9 118.1 0.5 CG A:GLU121 4.5 63.5 1.0 N A:GLU121 4.7 56.4 1.0 CB A:ASP118 4.9 63.4 1.0 CA A:ASP120 4.9 54.5 1.0 OD1 A:ASP118 4.9 85.8 1.0

Zinc binding site 9 out of 13 in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn309 b:129.4 occ:1.00 OD1 A:ASP154 2.3 94.1 1.0 OE2 A:GLU155 2.7 90.2 1.0 OE1 A:GLU155 3.0 98.5 1.0 CG A:ASP154 3.2 81.2 1.0 O A:HOH422 3.2 77.7 1.0 CD A:GLU155 3.2 82.7 1.0 O A:HOH421 3.2 76.0 1.0 OD2 A:ASP154 3.3 97.9 1.0 OD1 A:ASP152 3.6 95.4 1.0 CB A:ASP152 4.1 73.8 1.0 CG A:ASP152 4.1 93.3 1.0 CA A:ASP152 4.2 64.2 1.0 CB A:ASP154 4.6 68.1 1.0 C A:ASP152 4.7 52.9 1.0 CG A:GLU155 4.7 66.0 1.0 N A:GLU155 4.7 56.5 1.0 N A:ASP154 4.8 50.2 1.0

Zinc binding site 10 out of 13 in the Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Crystal Structure of An 8-Repeat Consensus Tpr Superhelix with Zinc. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn310 b:67.5 occ:0.50 OE2 A:GLU158 2.1 71.6 1.0 OE1 A:GLU158 2.5 63.7 1.0 CD A:GLU158 2.6 62.4 1.0 CG A:GLU158 4.1 62.4 1.0 OH A:TYR159 4.6 65.7 1.0 CB A:GLU158 4.9 54.1 1.0

M.Liutkus, A.L.Rojas, I.R.Sasselli, A.L.Cortajarena. Diverse Crystalline Protein Scaffolds Through Metal-Dependent Polymorphism. To Be Published.