Zinc in PDB 7zhs: 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80;

Binding sites:

The binding sites of Zinc atom in the 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry (pdb code 7zhs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 80 binding sites of Zinc where determined in the 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry, PDB code: 7zhs:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 80 in 7zhs

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Zinc binding site 1 out of 80 in the 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:41.0
occ:1.00
 SG A:CYS76 2.1 118.3 1.0
SG A:CYS73 2.3 228.3 1.0
SG A:CYS135 2.3 99.9 1.0
CB A:CYS73 2.6 232.2 1.0
SG A:CYS132 3.4 90.3 1.0
CB A:CYS135 3.5 117.4 1.0
CB A:CYS76 3.5 118.4 1.0
CB A:ARG131 3.8 123.2 1.0
O A:GLY80 3.8 400.0 1.0
CA A:CYS73 4.1 227.6 1.0
O A:ARG131 4.1 109.4 1.0
N A:CYS76 4.2 126.7 1.0
CA A:LYS139 4.3 161.3 1.0
C A:ARG131 4.3 115.8 1.0
CA A:ARG131 4.3 128.0 1.0
N A:LYS139 4.4 172.7 1.0
CA A:CYS76 4.4 125.4 1.0
O A:CYS73 4.4 207.7 1.0
C A:CYS73 4.5 206.8 1.0
C A:LYS139 4.5 133.3 1.0
CA A:CYS135 4.7 138.1 1.0
N A:CYS135 4.7 158.2 1.0
C A:GLY80 4.7 400.0 1.0
CA A:GLY80 4.8 400.0 1.0
N A:CYS73 4.8 257.2 1.0
O A:LYS139 4.8 134.4 1.0
C A:CYS76 5.0 132.3 1.0
CB A:CYS132 5.0 99.8 1.0

Zinc binding site 2 out of 80 in 7zhs

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Zinc binding site 2 out of 80 in the 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:30.8
occ:1.00
 SG A:CYS119 2.2 50.6 1.0
SG A:CYS92 2.2 139.8 1.0
SG A:CYS116 2.3 361.1 1.0
SG A:CYS89 2.7 157.4 1.0
CB A:CYS116 2.9 331.8 1.0
CB A:CYS92 3.0 128.2 1.0
CB A:CYS89 3.3 162.5 1.0
CB A:CYS119 3.4 54.0 1.0
N A:CYS92 3.7 104.5 1.0
N A:CYS119 3.9 73.2 1.0
CA A:CYS92 4.0 119.0 1.0
CB A:ALA91 4.0 88.0 1.0
CA A:CYS119 4.3 58.6 1.0
CA A:CYS116 4.4 322.8 1.0
CA A:GLY96 4.4 400.0 1.0
N A:GLY96 4.5 400.0 1.0
C A:GLY96 4.6 400.0 1.0
O A:GLY96 4.6 400.0 1.0
CA A:GLY123 4.6 91.1 1.0
C A:ALA91 4.6 92.5 1.0
CA A:CYS89 4.7 164.1 1.0
O A:CYS116 4.7 286.9 1.0
C A:ASP118 4.7 103.4 1.0
C A:CYS116 4.8 318.0 1.0
N A:GLY123 4.8 71.5 1.0
C A:CYS92 4.9 125.4 1.0
O A:CYS89 4.9 135.1 1.0
CA A:ALA91 4.9 87.8 1.0
CB A:ASP118 4.9 158.8 1.0
C A:CYS89 5.0 137.2 1.0
N A:ASP118 5.0 183.1 1.0

Zinc binding site 3 out of 80 in 7zhs

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Zinc binding site 3 out of 80 in the 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn401

b:107.4
occ:1.00
 SG C:CYS76 2.1 109.5 1.0
SG C:CYS73 2.3 187.5 1.0
SG C:CYS135 2.3 112.6 1.0
CB C:CYS73 2.6 199.1 1.0
SG C:CYS132 3.4 98.2 1.0
CB C:CYS135 3.5 122.3 1.0
CB C:CYS76 3.5 109.3 1.0
CB C:ARG131 3.8 114.3 1.0
O C:GLY80 3.8 414.8 1.0
CA C:CYS73 4.1 192.7 1.0
O C:ARG131 4.1 103.8 1.0
N C:CYS76 4.2 113.1 1.0
CA C:LYS139 4.3 233.6 1.0
C C:ARG131 4.3 110.9 1.0
CA C:ARG131 4.3 117.8 1.0
CA C:CYS76 4.4 118.0 1.0
N C:LYS139 4.4 234.7 1.0
O C:CYS73 4.4 156.4 1.0
C C:CYS73 4.5 161.9 1.0
C C:LYS139 4.5 189.7 1.0
CA C:CYS135 4.7 136.9 1.0
N C:CYS135 4.7 148.2 1.0
C C:GLY80 4.7 417.8 1.0
CA C:GLY80 4.8 418.6 1.0
N C:CYS73 4.8 232.2 1.0
O C:LYS139 4.8 207.5 1.0
C C:CYS76 5.0 131.4 1.0
CB C:CYS132 5.0 107.3 1.0

Zinc binding site 4 out of 80 in 7zhs

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Zinc binding site 4 out of 80 in the 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn402

b:31.4
occ:1.00
 SG C:CYS119 2.2 53.1 1.0
SG C:CYS92 2.2 161.6 1.0
SG C:CYS116 2.3 320.8 1.0
SG C:CYS89 2.7 125.3 1.0
CB C:CYS116 2.9 288.7 1.0
CB C:CYS92 3.0 151.9 1.0
CB C:CYS89 3.3 136.7 1.0
CB C:CYS119 3.4 57.9 1.0
N C:CYS92 3.7 119.5 1.0
N C:CYS119 3.9 69.1 1.0
CA C:CYS92 4.0 136.9 1.0
CB C:ALA91 4.0 97.3 1.0
CA C:CYS119 4.3 61.1 1.0
CA C:CYS116 4.4 256.8 1.0
CA C:GLY96 4.4 400.0 1.0
N C:GLY96 4.5 409.4 1.0
C C:GLY96 4.6 400.0 1.0
O C:GLY96 4.6 400.0 1.0
CA C:GLY123 4.6 106.0 1.0
C C:ALA91 4.6 105.2 1.0
CA C:CYS89 4.7 149.9 1.0
O C:CYS116 4.7 201.4 1.0
C C:ASP118 4.7 84.8 1.0
C C:CYS116 4.8 223.4 1.0
N C:GLY123 4.8 77.0 1.0
C C:CYS92 4.9 142.5 1.0
O C:CYS89 4.9 125.1 1.0
CA C:ALA91 4.9 98.2 1.0
CB C:ASP118 4.9 109.8 1.0
C C:CYS89 5.0 127.7 1.0
N C:ASP118 5.0 122.9 1.0

Zinc binding site 5 out of 80 in 7zhs

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Zinc binding site 5 out of 80 in the 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:43.3
occ:1.00
 SG B:CYS76 2.1 122.6 1.0
SG B:CYS73 2.3 218.0 1.0
SG B:CYS135 2.3 98.8 1.0
CB B:CYS73 2.6 221.5 1.0
SG B:CYS132 3.4 91.4 1.0
CB B:CYS135 3.5 118.9 1.0
CB B:CYS76 3.5 122.0 1.0
CB B:ARG131 3.8 123.6 1.0
O B:GLY80 3.8 400.0 1.0
CA B:CYS73 4.1 219.7 1.0
O B:ARG131 4.1 111.8 1.0
N B:CYS76 4.2 131.0 1.0
CA B:LYS139 4.3 164.2 1.0
C B:ARG131 4.3 117.5 1.0
CA B:ARG131 4.3 128.1 1.0
N B:LYS139 4.4 173.1 1.0
CA B:CYS76 4.4 127.5 1.0
O B:CYS73 4.4 202.1 1.0
C B:CYS73 4.5 202.0 1.0
C B:LYS139 4.5 135.2 1.0
CA B:CYS135 4.7 141.3 1.0
N B:CYS135 4.7 162.8 1.0
C B:GLY80 4.7 400.0 1.0
CA B:GLY80 4.8 400.0 1.0
N B:CYS73 4.8 249.8 1.0
O B:LYS139 4.8 136.0 1.0
C B:CYS76 5.0 131.3 1.0
CB B:CYS132 5.0 102.7 1.0

Zinc binding site 6 out of 80 in 7zhs

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Zinc binding site 6 out of 80 in the 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn402

b:56.5
occ:1.00
 SG B:CYS119 2.2 58.2 1.0
SG B:CYS92 2.2 145.9 1.0
SG B:CYS116 2.3 386.3 1.0
SG B:CYS89 2.7 161.8 1.0
CB B:CYS116 2.9 338.5 1.0
CB B:CYS92 3.0 138.0 1.0
CB B:CYS89 3.3 165.1 1.0
CB B:CYS119 3.4 62.5 1.0
N B:CYS92 3.7 113.4 1.0
N B:CYS119 3.9 81.5 1.0
CA B:CYS92 4.0 128.6 1.0
CB B:ALA91 4.1 96.3 1.0
CA B:CYS119 4.3 66.4 1.0
CA B:CYS116 4.4 328.9 1.0
CA B:GLY96 4.4 400.0 1.0
N B:GLY96 4.5 400.0 1.0
C B:GLY96 4.6 400.0 1.0
O B:GLY96 4.6 400.0 1.0
CA B:GLY123 4.6 99.6 1.0
C B:ALA91 4.6 101.2 1.0
CA B:CYS89 4.7 165.7 1.0
O B:CYS116 4.7 304.5 1.0
C B:ASP118 4.7 111.5 1.0
C B:CYS116 4.8 335.7 1.0
N B:GLY123 4.8 77.3 1.0
C B:CYS92 4.9 134.8 1.0
O B:CYS89 4.9 137.2 1.0
CA B:ALA91 4.9 96.4 1.0
CB B:ASP118 4.9 159.6 1.0
C B:CYS89 5.0 139.5 1.0
N B:ASP118 5.0 184.0 1.0

Zinc binding site 7 out of 80 in 7zhs

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Zinc binding site 7 out of 80 in the 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn401

b:103.3
occ:1.00
 SG D:CYS76 2.1 115.8 1.0
SG D:CYS73 2.3 180.2 1.0
SG D:CYS135 2.3 113.8 1.0
CB D:CYS73 2.6 191.1 1.0
SG D:CYS132 3.4 100.2 1.0
CB D:CYS135 3.5 125.6 1.0
CB D:CYS76 3.5 114.3 1.0
CB D:ARG131 3.8 116.4 1.0
O D:GLY80 3.8 401.1 1.0
CA D:CYS73 4.1 185.6 1.0
O D:ARG131 4.1 108.0 1.0
N D:CYS76 4.2 116.5 1.0
CA D:LYS139 4.3 251.3 1.0
C D:ARG131 4.3 113.3 1.0
CA D:ARG131 4.3 117.7 1.0
CA D:CYS76 4.4 121.2 1.0
N D:LYS139 4.4 254.3 1.0
O D:CYS73 4.4 148.9 1.0
C D:CYS73 4.5 155.0 1.0
C D:LYS139 4.5 196.3 1.0
CA D:CYS135 4.7 143.0 1.0
N D:CYS135 4.7 156.1 1.0
C D:GLY80 4.7 404.1 1.0
CA D:GLY80 4.8 404.7 1.0
N D:CYS73 4.8 229.2 1.0
O D:LYS139 4.8 213.1 1.0
C D:CYS76 5.0 131.8 1.0
CB D:CYS132 5.0 110.7 1.0

Zinc binding site 8 out of 80 in 7zhs

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Zinc binding site 8 out of 80 in the 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn402

b:44.5
occ:1.00
 SG D:CYS119 2.2 43.1 1.0
SG D:CYS92 2.2 149.9 1.0
SG D:CYS116 2.3 330.1 1.0
SG D:CYS89 2.7 124.5 1.0
CB D:CYS116 2.9 300.1 1.0
CB D:CYS92 3.0 143.2 1.0
CB D:CYS89 3.3 133.4 1.0
CB D:CYS119 3.4 49.5 1.0
N D:CYS92 3.7 117.5 1.0
N D:CYS119 3.9 65.5 1.0
CA D:CYS92 4.0 132.6 1.0
CB D:ALA91 4.1 95.6 1.0
CA D:CYS119 4.3 54.8 1.0
CA D:CYS116 4.4 268.5 1.0
CA D:GLY96 4.4 402.5 1.0
N D:GLY96 4.5 416.5 1.0
C D:GLY96 4.6 400.0 1.0
O D:GLY96 4.6 400.0 1.0
CA D:GLY123 4.6 101.6 1.0
C D:ALA91 4.6 103.9 1.0
CA D:CYS89 4.7 144.1 1.0
O D:CYS116 4.7 213.4 1.0
C D:ASP118 4.7 83.3 1.0
C D:CYS116 4.8 234.0 1.0
N D:GLY123 4.8 78.6 1.0
C D:CYS92 4.9 138.7 1.0
O D:CYS89 4.9 122.5 1.0
CA D:ALA91 4.9 96.7 1.0
CB D:ASP118 4.9 112.3 1.0
C D:CYS89 4.9 124.2 1.0
N D:ASP118 5.0 127.0 1.0

Zinc binding site 9 out of 80 in 7zhs

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Zinc binding site 9 out of 80 in the 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn401

b:146.1
occ:1.00
 SG E:CYS76 2.1 413.8 1.0
SG E:CYS73 2.3 297.4 1.0
SG E:CYS135 2.3 440.0 1.0
CB E:CYS73 2.6 319.6 1.0
SG E:CYS132 3.4 224.0 1.0
CB E:CYS135 3.5 440.0 1.0
CB E:CYS76 3.5 414.2 1.0
CB E:ARG131 3.8 364.7 1.0
O E:GLY80 3.8 440.0 1.0
CA E:CYS73 4.1 335.5 1.0
O E:ARG131 4.1 276.7 1.0
N E:CYS76 4.2 418.0 1.0
CA E:LYS139 4.3 440.0 1.0
C E:ARG131 4.3 306.8 1.0
CA E:ARG131 4.3 350.9 1.0
N E:LYS139 4.4 440.0 1.0
O E:CYS73 4.4 353.4 1.0
CA E:CYS76 4.4 428.2 1.0
C E:CYS73 4.5 343.8 1.0
C E:LYS139 4.5 440.0 1.0
CA E:CYS135 4.7 440.0 1.0
N E:CYS135 4.7 440.0 1.0
C E:GLY80 4.7 440.0 1.0
CA E:GLY80 4.8 440.0 1.0
N E:CYS73 4.8 346.1 1.0
O E:LYS139 4.8 440.0 1.0
C E:CYS76 5.0 438.2 1.0
CB E:CYS132 5.0 246.3 1.0

Zinc binding site 10 out of 80 in 7zhs

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Zinc binding site 10 out of 80 in the 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of 3D Reconstruction of the Cylindrical Assembly of DNAJA2 Delta G/F By Imposing D5 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn402

b:291.1
occ:1.00
 SG E:CYS92 2.2 305.2 1.0
SG E:CYS119 2.2 158.2 1.0
SG E:CYS116 2.3 440.0 1.0
SG E:CYS89 2.7 271.5 1.0
CB E:CYS116 2.9 440.0 1.0
CB E:CYS92 3.0 301.9 1.0
CB E:CYS89 3.3 287.0 1.0
CB E:CYS119 3.4 171.1 1.0
N E:CYS92 3.7 255.8 1.0
N E:CYS119 3.9 214.4 1.0
CA E:CYS92 4.0 277.5 1.0
CB E:ALA91 4.0 222.1 1.0
CA E:CYS119 4.3 186.4 1.0
CA E:CYS116 4.4 440.0 1.0
CA E:GLY96 4.4 420.7 1.0
N E:GLY96 4.5 423.8 1.0
C E:GLY96 4.6 418.8 1.0
O E:GLY96 4.6 420.6 1.0
CA E:GLY123 4.6 214.0 1.0
C E:ALA91 4.6 232.9 1.0
CA E:CYS89 4.7 308.3 1.0
O E:CYS116 4.7 433.3 1.0
C E:ASP118 4.7 261.9 1.0
C E:CYS116 4.8 434.9 1.0
N E:GLY123 4.8 179.3 1.0
C E:CYS92 4.9 275.5 1.0
O E:CYS89 4.9 269.9 1.0
CA E:ALA91 4.9 221.0 1.0
CB E:ASP118 4.9 341.0 1.0
C E:CYS89 4.9 273.3 1.0
N E:ASP118 5.0 351.1 1.0

Reference:

L.Velasco-Carneros, J.Cuellar, L.Dublang, C.Santiago, J.D.Marechal, J.Martin-Benito, J.A.Fernandez-Higuero, N.Orozco, F.Moro, J.M.Valpuesta, A.Muga. The Class A HSP40 DNAJA2 Self-Associates Into Ordered, Highly Dynamic Tubular Oligomers That Productively Interact with Unfolded Substrates and HSC70 To Be Published.
Page generated: Wed Oct 30 16:28:31 2024

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