Zinc in PDB 7zbh: Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi
Protein crystallography data
The structure of Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi, PDB code: 7zbh
was solved by
K.Brangulis,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
96.75 /
3.30
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
153.81,
192.8,
114.13,
90,
124.31,
90
|
R / Rfree (%)
|
27.9 /
33.2
|
Zinc Binding Sites:
The binding sites of Zinc atom in the Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi
(pdb code 7zbh). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the
Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi, PDB code: 7zbh:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
Zinc binding site 1 out
of 6 in 7zbh
Go back to
Zinc Binding Sites List in 7zbh
Zinc binding site 1 out
of 6 in the Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn702
b:66.9
occ:0.00
|
NE2
|
A:HIS434
|
1.2
|
71.9
|
1.0
|
OD2
|
A:ASP510
|
1.6
|
76.0
|
1.0
|
NE2
|
A:HIS438
|
1.7
|
107.0
|
1.0
|
CE1
|
A:HIS434
|
1.9
|
76.1
|
1.0
|
CG
|
A:ASP510
|
2.2
|
79.7
|
1.0
|
CD2
|
A:HIS434
|
2.3
|
106.0
|
1.0
|
OD1
|
A:ASP510
|
2.4
|
110.3
|
1.0
|
CE1
|
A:HIS438
|
2.6
|
110.0
|
1.0
|
CD2
|
A:HIS438
|
2.8
|
120.0
|
1.0
|
ND1
|
A:HIS434
|
3.0
|
88.6
|
1.0
|
CG
|
A:HIS434
|
3.2
|
105.8
|
1.0
|
CB
|
A:ASP510
|
3.5
|
95.7
|
1.0
|
ND1
|
A:HIS438
|
3.7
|
132.7
|
1.0
|
CG
|
A:HIS438
|
3.9
|
134.8
|
1.0
|
O
|
A:GLY506
|
4.3
|
93.5
|
1.0
|
CB
|
A:HIS434
|
4.6
|
104.8
|
1.0
|
CA
|
A:ASP510
|
4.8
|
99.1
|
1.0
|
O
|
A:CYS489
|
4.8
|
65.0
|
1.0
|
OE2
|
A:GLU435
|
4.8
|
86.9
|
1.0
|
O
|
A:HIS434
|
4.8
|
151.2
|
1.0
|
CA
|
A:GLY492
|
5.0
|
80.7
|
1.0
|
|
Zinc binding site 2 out
of 6 in 7zbh
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Zinc Binding Sites List in 7zbh
Zinc binding site 2 out
of 6 in the Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn702
b:77.7
occ:0.00
|
NE2
|
B:HIS438
|
1.7
|
97.4
|
1.0
|
OD2
|
B:ASP510
|
1.7
|
116.3
|
1.0
|
NE2
|
B:HIS434
|
1.9
|
96.3
|
1.0
|
CD2
|
B:HIS438
|
2.5
|
115.9
|
1.0
|
CD2
|
B:HIS434
|
2.7
|
106.4
|
1.0
|
CG
|
B:ASP510
|
2.7
|
123.3
|
1.0
|
CE1
|
B:HIS438
|
2.8
|
104.3
|
1.0
|
CE1
|
B:HIS434
|
3.0
|
115.4
|
1.0
|
OD1
|
B:ASP510
|
3.0
|
124.7
|
1.0
|
CG
|
B:HIS438
|
3.6
|
138.8
|
1.0
|
ND1
|
B:HIS438
|
3.7
|
125.1
|
1.0
|
CG
|
B:HIS434
|
3.9
|
122.1
|
1.0
|
ND1
|
B:HIS434
|
4.0
|
115.7
|
1.0
|
CB
|
B:ASP510
|
4.1
|
121.9
|
1.0
|
OE2
|
B:GLU435
|
4.5
|
97.0
|
1.0
|
OE1
|
B:GLU435
|
4.5
|
113.6
|
1.0
|
CD
|
B:GLU435
|
4.9
|
110.9
|
1.0
|
CB
|
B:HIS438
|
5.0
|
128.5
|
1.0
|
O
|
B:GLY506
|
5.0
|
91.3
|
1.0
|
|
Zinc binding site 3 out
of 6 in 7zbh
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Zinc Binding Sites List in 7zbh
Zinc binding site 3 out
of 6 in the Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn702
b:79.3
occ:0.00
|
NE2
|
D:HIS438
|
1.9
|
95.9
|
1.0
|
NE2
|
D:HIS434
|
2.0
|
73.0
|
1.0
|
OD2
|
D:ASP510
|
2.1
|
91.1
|
1.0
|
CD2
|
D:HIS438
|
2.5
|
125.0
|
1.0
|
CD2
|
D:HIS434
|
2.6
|
85.5
|
1.0
|
CE1
|
D:HIS438
|
3.0
|
135.1
|
1.0
|
CG
|
D:ASP510
|
3.1
|
102.6
|
1.0
|
CE1
|
D:HIS434
|
3.2
|
91.0
|
1.0
|
OD1
|
D:ASP510
|
3.3
|
125.1
|
1.0
|
CG
|
D:HIS438
|
3.6
|
138.8
|
1.0
|
ND1
|
D:HIS438
|
3.8
|
144.9
|
1.0
|
CG
|
D:HIS434
|
3.9
|
106.4
|
1.0
|
OE2
|
D:GLU435
|
4.1
|
128.1
|
1.0
|
ND1
|
D:HIS434
|
4.1
|
116.7
|
1.0
|
OE1
|
D:GLU435
|
4.2
|
154.0
|
1.0
|
CB
|
D:ASP510
|
4.5
|
119.5
|
1.0
|
CD
|
D:GLU435
|
4.5
|
157.9
|
1.0
|
CB
|
D:HIS438
|
4.9
|
129.1
|
1.0
|
|
Zinc binding site 4 out
of 6 in 7zbh
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Zinc Binding Sites List in 7zbh
Zinc binding site 4 out
of 6 in the Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Zn702
b:79.2
occ:0.00
|
NE2
|
F:HIS434
|
2.2
|
79.2
|
1.0
|
OD2
|
F:ASP510
|
2.6
|
82.9
|
1.0
|
NE2
|
F:HIS438
|
2.8
|
99.3
|
1.0
|
CD2
|
F:HIS434
|
2.8
|
101.4
|
1.0
|
OD1
|
F:ASP510
|
3.2
|
121.0
|
1.0
|
CG
|
F:ASP510
|
3.3
|
91.1
|
1.0
|
CD2
|
F:HIS438
|
3.3
|
109.6
|
1.0
|
CE1
|
F:HIS434
|
3.4
|
79.0
|
1.0
|
CE1
|
F:HIS438
|
3.9
|
93.2
|
1.0
|
OE2
|
F:GLU435
|
4.0
|
77.2
|
1.0
|
CG
|
F:HIS434
|
4.1
|
105.7
|
1.0
|
ND1
|
F:HIS434
|
4.3
|
90.2
|
1.0
|
OE1
|
F:GLU435
|
4.3
|
110.6
|
1.0
|
CG
|
F:HIS438
|
4.5
|
113.0
|
1.0
|
CD
|
F:GLU435
|
4.6
|
100.7
|
1.0
|
ND1
|
F:HIS438
|
4.7
|
135.7
|
1.0
|
O
|
F:GLY506
|
4.8
|
123.8
|
1.0
|
CB
|
F:ASP510
|
4.8
|
110.5
|
1.0
|
OD1
|
F:ASN509
|
4.9
|
167.0
|
1.0
|
|
Zinc binding site 5 out
of 6 in 7zbh
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Zinc Binding Sites List in 7zbh
Zinc binding site 5 out
of 6 in the Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn702
b:80.8
occ:0.00
|
NE2
|
I:HIS434
|
1.9
|
84.3
|
1.0
|
OD2
|
I:ASP510
|
2.2
|
87.9
|
1.0
|
NE2
|
I:HIS438
|
2.7
|
91.2
|
1.0
|
OD1
|
I:ASP510
|
2.7
|
125.9
|
1.0
|
CD2
|
I:HIS434
|
2.7
|
92.4
|
1.0
|
CG
|
I:ASP510
|
2.8
|
106.9
|
1.0
|
CE1
|
I:HIS434
|
3.0
|
99.7
|
1.0
|
CD2
|
I:HIS438
|
3.4
|
122.3
|
1.0
|
CE1
|
I:HIS438
|
3.7
|
109.1
|
1.0
|
CG
|
I:HIS434
|
3.9
|
116.5
|
1.0
|
ND1
|
I:HIS434
|
4.0
|
108.0
|
1.0
|
OE2
|
I:GLU435
|
4.2
|
127.0
|
1.0
|
CB
|
I:ASP510
|
4.3
|
129.5
|
1.0
|
O
|
I:GLY506
|
4.4
|
119.1
|
1.0
|
CG
|
I:HIS438
|
4.6
|
124.5
|
1.0
|
ND1
|
I:HIS438
|
4.7
|
112.0
|
1.0
|
OD1
|
I:ASN509
|
4.7
|
184.7
|
1.0
|
OE1
|
I:GLU435
|
4.7
|
167.3
|
1.0
|
CD
|
I:GLU435
|
4.9
|
166.6
|
1.0
|
|
Zinc binding site 6 out
of 6 in 7zbh
Go back to
Zinc Binding Sites List in 7zbh
Zinc binding site 6 out
of 6 in the Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Atp-Dependent Zinc Metalloprotease Ftsh (BB0789) From Borrelia Burgdorferi within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Zn702
b:82.7
occ:0.00
|
NE2
|
K:HIS434
|
2.0
|
71.1
|
1.0
|
OD2
|
K:ASP510
|
2.6
|
92.0
|
1.0
|
CD2
|
K:HIS434
|
2.8
|
78.3
|
1.0
|
OD1
|
K:ASP510
|
2.9
|
120.2
|
1.0
|
NE2
|
K:HIS438
|
3.0
|
133.2
|
1.0
|
CG
|
K:ASP510
|
3.1
|
103.9
|
1.0
|
CE1
|
K:HIS434
|
3.2
|
63.2
|
1.0
|
CD2
|
K:HIS438
|
3.7
|
146.9
|
1.0
|
CG
|
K:HIS434
|
4.0
|
89.7
|
1.0
|
OE2
|
K:GLU435
|
4.0
|
121.1
|
1.0
|
CE1
|
K:HIS438
|
4.1
|
150.3
|
1.0
|
ND1
|
K:HIS434
|
4.1
|
74.0
|
1.0
|
O
|
K:GLY506
|
4.3
|
82.4
|
1.0
|
CB
|
K:ASP510
|
4.6
|
98.6
|
1.0
|
OE1
|
K:GLU435
|
4.6
|
116.8
|
1.0
|
CD
|
K:GLU435
|
4.7
|
101.7
|
1.0
|
CG
|
K:HIS438
|
4.9
|
161.6
|
1.0
|
|
Reference:
K.Brangulis,
K.Brangulis.
N/A N/A.
Page generated: Wed Oct 30 16:21:10 2024
|