Zinc in PDB 7z0u: Crystal Structure of ATWRKY18 Dna-Binding Domain in Complex with W-Box Dna

The structure of Crystal Structure of ATWRKY18 Dna-Binding Domain in Complex with W-Box Dna, PDB code: 7z0u was solved by M.Grzechowiak, M.Jaskolski, M.Ruszkowski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.88 / 2.85
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	112.788, 112.788, 101.664, 90, 90, 90
R / Rfree (%)	25.1 / 30

The binding sites of Zinc atom in the Crystal Structure of ATWRKY18 Dna-Binding Domain in Complex with W-Box Dna (pdb code 7z0u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of ATWRKY18 Dna-Binding Domain in Complex with W-Box Dna, PDB code: 7z0u:

Zinc binding site 1 out of 1 in the Crystal Structure of ATWRKY18 Dna-Binding Domain in Complex with W-Box Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of ATWRKY18 Dna-Binding Domain in Complex with W-Box Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:90.7 occ:1.00 ND1 A:HIS231 2.1 90.4 1.0 NE2 A:HIS233 2.1 117.0 1.0 SG A:CYS207 2.3 87.1 1.0 SG A:CYS201 2.3 93.5 1.0 CE1 A:HIS233 2.6 117.0 1.0 CE1 A:HIS231 2.9 83.3 1.0 CB A:CYS207 3.0 91.2 1.0 CG A:HIS231 3.2 90.8 1.0 CB A:CYS201 3.2 81.5 1.0 CD2 A:HIS233 3.4 119.5 1.0 CB A:HIS231 3.6 95.5 1.0 ND1 A:HIS233 3.8 119.4 1.0 CB A:PHE203 3.9 103.8 1.0 NE2 A:HIS231 4.1 80.8 1.0 CA A:HIS231 4.1 98.1 1.0 CD2 A:HIS231 4.2 83.2 1.0 CG A:HIS233 4.3 121.2 1.0 CA A:CYS207 4.5 98.7 1.0 CD1 A:PHE203 4.5 110.2 1.0 CG A:PHE203 4.5 109.9 1.0 CB A:VAL209 4.6 81.0 1.0 CA A:CYS201 4.6 81.1 1.0 N A:PHE203 4.6 94.0 1.0 CG2 A:VAL209 4.7 85.5 1.0 CD1 A:PHE179 4.7 86.2 1.0 CA A:PHE203 4.8 95.1 1.0 N A:ASN232 4.9 112.8 1.0 CE1 A:PHE179 4.9 86.8 1.0

M.Grzechowiak, A.Ruszkowska, J.Sliwiak, A.Urbanowicz, M.Jaskolski, M.Ruszkowski. New Aspects of Dna Recognition By Group II Wrky Transcription Factor Revealed By Structural and Functional Study of ATWRKY18 Dna Binding Domain. Int.J.Biol.Macromol. V. 213 589 2022.
ISSN: ISSN 0141-8130
PubMed: 35660042
DOI: 10.1016/J.IJBIOMAC.2022.05.186