Zinc in PDB 7y76: SIT1-ACE2-Ba.5 Rbd

Enzymatic activity of SIT1-ACE2-Ba.5 Rbd

All present enzymatic activity of SIT1-ACE2-Ba.5 Rbd:
3.4.17.23;

Zinc Binding Sites:

The binding sites of Zinc atom in the SIT1-ACE2-Ba.5 Rbd (pdb code 7y76). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the SIT1-ACE2-Ba.5 Rbd, PDB code: 7y76:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7y76

Go back to Zinc Binding Sites List in 7y76
Zinc binding site 1 out of 2 in the SIT1-ACE2-Ba.5 Rbd


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of SIT1-ACE2-Ba.5 Rbd within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn902

b:82.5
occ:1.00
OE1 A:GLU402 2.0 57.6 1.0
NE2 A:HIS374 2.0 64.5 1.0
OE2 A:GLU402 2.1 57.6 1.0
CE1 A:HIS378 2.1 61.8 1.0
CD A:GLU402 2.3 57.6 1.0
NE2 A:HIS378 2.3 61.8 1.0
CD2 A:HIS374 2.9 64.5 1.0
CE1 A:HIS374 3.1 64.5 1.0
ND1 A:HIS378 3.3 61.8 1.0
CD2 A:HIS378 3.6 61.8 1.0
CG A:GLU402 3.8 57.6 1.0
CG A:HIS378 4.0 61.8 1.0
CG A:HIS374 4.1 64.5 1.0
ND1 A:HIS374 4.1 64.5 1.0
CB A:GLU402 4.5 57.6 1.0
CA A:GLU402 4.6 57.6 1.0
OE1 A:GLU375 4.8 68.5 1.0

Zinc binding site 2 out of 2 in 7y76

Go back to Zinc Binding Sites List in 7y76
Zinc binding site 2 out of 2 in the SIT1-ACE2-Ba.5 Rbd


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of SIT1-ACE2-Ba.5 Rbd within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn902

b:82.2
occ:1.00
OE1 C:GLU402 2.0 57.4 1.0
NE2 C:HIS374 2.0 64.0 1.0
OE2 C:GLU402 2.1 57.4 1.0
CE1 C:HIS378 2.1 61.5 1.0
CD C:GLU402 2.3 57.4 1.0
NE2 C:HIS378 2.3 61.5 1.0
CD2 C:HIS374 2.9 64.0 1.0
CE1 C:HIS374 3.1 64.0 1.0
ND1 C:HIS378 3.3 61.5 1.0
CD2 C:HIS378 3.6 61.5 1.0
CG C:GLU402 3.8 57.4 1.0
CG C:HIS378 4.0 61.5 1.0
CG C:HIS374 4.1 64.0 1.0
ND1 C:HIS374 4.1 64.0 1.0
CB C:GLU402 4.5 57.4 1.0
CA C:GLU402 4.6 57.4 1.0
OE1 C:GLU375 4.8 67.9 1.0

Reference:

Y.P.Shen, Y.Li, Y.Zhang, R.Yan. Structures of ACE2-SIT1 Recognized By Omicron Variants of Sars-Cov-2 Cell Discovery V. 8 2022.
Page generated: Sat Apr 8 06:11:59 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy