Zinc in PDB 7xyo: Crystal Structure of A M61 Aminopeptidase Family Member From Myxococcus Fulvus

The structure of Crystal Structure of A M61 Aminopeptidase Family Member From Myxococcus Fulvus, PDB code: 7xyo was solved by X.Chen, X.Wang, L.Huo, D.Wu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.11 / 2.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	96.679, 113.278, 132.345, 90, 90, 90
R / Rfree (%)	21.7 / 25

The binding sites of Zinc atom in the Crystal Structure of A M61 Aminopeptidase Family Member From Myxococcus Fulvus (pdb code 7xyo). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A M61 Aminopeptidase Family Member From Myxococcus Fulvus, PDB code: 7xyo:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of A M61 Aminopeptidase Family Member From Myxococcus Fulvus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A M61 Aminopeptidase Family Member From Myxococcus Fulvus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn703 b:48.6 occ:1.00 OE1 A:GLU309 2.0 46.6 1.0 NE2 A:HIS280 2.3 39.7 1.0 NE2 A:HIS284 2.3 42.5 1.0 O A:HOH857 2.7 42.5 1.0 CD A:GLU309 2.9 48.5 1.0 CD2 A:HIS280 3.0 36.5 1.0 OE2 A:GLU309 3.0 46.9 1.0 CD2 A:HIS284 3.2 41.7 1.0 CE1 A:HIS284 3.3 43.4 1.0 CE1 A:HIS280 3.4 38.0 1.0 OH A:TYR373 3.5 50.2 1.0 CE2 A:TYR373 4.2 42.0 1.0 OE2 A:GLU281 4.3 47.5 1.0 CZ A:TYR373 4.3 45.6 1.0 CG A:HIS280 4.3 34.2 1.0 CG A:GLU309 4.3 38.4 1.0 ND1 A:HIS284 4.4 43.9 1.0 CG A:HIS284 4.4 43.1 1.0 ND1 A:HIS280 4.4 37.2 1.0 CD A:GLU281 4.8 46.8 1.0 OE1 A:GLU281 4.8 48.2 1.0 CB A:GLU309 5.0 31.7 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of A M61 Aminopeptidase Family Member From Myxococcus Fulvus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A M61 Aminopeptidase Family Member From Myxococcus Fulvus within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn602 b:52.9 occ:1.00 NE2 B:HIS280 2.3 37.3 1.0 NE2 B:HIS284 2.4 42.5 1.0 OE1 B:GLU309 2.4 44.8 1.0 OH B:TYR373 2.9 45.8 1.0 CD2 B:HIS280 2.9 39.7 1.0 CD2 B:HIS284 3.3 41.3 1.0 CE1 B:HIS284 3.3 47.2 1.0 CE1 B:HIS280 3.4 40.8 1.0 CD B:GLU309 3.5 47.7 1.0 OE2 B:GLU309 3.9 48.4 1.0 OE1 B:GLU281 4.0 45.1 1.0 CZ B:TYR373 4.0 40.7 1.0 CE1 B:TYR373 4.1 39.2 1.0 CG B:HIS280 4.2 38.8 1.0 ND1 B:HIS280 4.3 42.4 1.0 ND1 B:HIS284 4.4 46.8 1.0 CG B:HIS284 4.4 44.3 1.0 CD B:GLU281 4.7 46.2 1.0 O B:HOH707 4.8 39.1 1.0 CG B:GLU309 4.8 43.2 1.0 OE2 B:GLU281 4.8 51.7 1.0

X.Chen, X.Wang, L.Huo, D.Wu. Myxococins: An Intriguing Macrocycle-Containing Lanthipeptide with Novel Biosynthetic Mechanism To Be Published.