Atomistry » Zinc » PDB 7xo9-7xz2 » 7xvn
Atomistry »
  Zinc »
    PDB 7xo9-7xz2 »
      7xvn »

Zinc in PDB 7xvn: Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors

Protein crystallography data

The structure of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors, PDB code: 7xvn was solved by Y.Chen, L.Jiang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.00 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 33.627, 64.584, 238.635, 90, 90, 90
R / Rfree (%) 20.8 / 25.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors (pdb code 7xvn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors, PDB code: 7xvn:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 1 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:32.5
occ:1.00
 SG A:CYS34 2.3 39.8 1.0
SG A:CYS51 2.3 38.0 1.0
SG A:CYS31 2.4 33.2 1.0
SG A:CYS48 2.4 33.1 1.0
CB A:CYS51 3.3 34.4 1.0
CB A:CYS31 3.3 34.6 1.0
CB A:CYS34 3.5 38.4 1.0
CB A:CYS48 3.7 33.3 1.0
N A:CYS34 3.8 35.6 1.0
N A:CYS48 4.0 27.0 1.0
N A:CYS51 4.0 34.1 1.0
CA A:CYS34 4.2 37.4 1.0
CB A:ILE33 4.2 40.9 1.0
CA A:CYS51 4.3 33.7 1.0
CA A:CYS48 4.4 29.0 1.0
NH1 A:ARG80 4.4 41.1 1.0
CB A:ASP36 4.7 39.5 1.0
C A:ILE33 4.7 38.0 1.0
NH2 A:ARG87 4.8 33.5 1.0
CA A:CYS31 4.8 35.0 1.0
CA A:ILE33 4.8 39.3 1.0
C A:CYS34 4.8 38.0 1.0
CG1 A:ILE33 4.9 44.9 1.0
N A:ASP36 4.9 38.6 1.0
N A:GLY35 4.9 38.1 1.0
N A:ILE33 4.9 37.8 1.0
CG2 A:ILE33 4.9 39.9 1.0
CD A:ARG80 5.0 41.3 1.0
C A:CYS48 5.0 26.7 1.0

Zinc binding site 2 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 2 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:52.8
occ:1.00
 SG A:CYS73 2.4 56.8 1.0
SG A:CYS83 2.5 54.7 1.0
SG A:CYS67 2.7 60.4 1.0
SG A:CYS86 2.7 55.0 1.0
CB A:CYS73 3.2 54.4 1.0
CB A:CYS83 3.2 53.7 1.0
CB A:CYS86 3.5 47.5 1.0
N A:CYS73 3.9 57.4 1.0
CB A:CYS67 3.9 62.5 1.0
CA A:CYS73 4.2 56.2 1.0
N A:CYS86 4.4 45.1 1.0
CA A:CYS86 4.5 45.0 1.0
N A:ASN72 4.6 65.9 1.0
CA A:GLN71 4.6 66.2 1.0
CA A:CYS67 4.6 63.1 1.0
CA A:CYS83 4.7 53.0 1.0
N A:GLN71 4.8 69.2 1.0
C A:GLN71 4.9 65.6 1.0
CB A:ARG69 5.0 68.0 1.0

Zinc binding site 3 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 3 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:31.7
occ:1.00
 SG B:CYS51 2.3 32.1 1.0
SG B:CYS34 2.4 30.9 1.0
SG B:CYS48 2.4 30.4 1.0
SG B:CYS31 2.4 30.0 1.0
CB B:CYS51 3.2 32.2 1.0
CB B:CYS31 3.3 33.2 1.0
CB B:CYS48 3.5 31.5 1.0
CB B:CYS34 3.5 32.4 1.0
N B:CYS34 3.8 32.7 1.0
N B:CYS48 3.9 29.2 1.0
N B:CYS51 4.0 25.0 1.0
CA B:CYS34 4.2 34.8 1.0
CA B:CYS51 4.2 30.1 1.0
CA B:CYS48 4.3 30.2 1.0
CB B:ILE33 4.3 35.1 1.0
NH1 B:ARG80 4.4 37.4 1.0
NH2 B:ARG87 4.7 24.3 1.0
C B:ILE33 4.7 34.2 1.0
CA B:CYS31 4.8 33.4 1.0
N B:GLY35 4.8 33.4 1.0
CB B:ASP36 4.8 40.9 1.0
C B:CYS34 4.8 35.7 1.0
C B:CYS48 4.9 33.1 1.0
CA B:ILE33 4.9 34.4 1.0
N B:ASP36 4.9 36.0 1.0
N B:ILE33 4.9 34.4 1.0
O B:CYS48 4.9 35.1 1.0
CD B:ARG80 5.0 34.3 1.0

Zinc binding site 4 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 4 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn202

b:34.9
occ:1.00
 SG B:CYS67 2.3 39.1 1.0
SG B:CYS83 2.3 37.6 1.0
SG B:CYS73 2.4 36.4 1.0
SG B:CYS86 2.4 42.4 1.0
CB B:CYS67 3.3 39.3 1.0
CB B:CYS83 3.3 37.0 1.0
CB B:CYS86 3.4 36.3 1.0
CB B:CYS73 3.6 35.6 1.0
O B:HOH312 3.9 47.0 1.0
N B:CYS73 4.1 38.6 1.0
CA B:CYS67 4.2 41.4 1.0
O B:HOH310 4.2 44.3 1.0
N B:CYS86 4.2 34.8 1.0
ND1 B:HIS85 4.4 34.4 1.0
CA B:CYS86 4.4 34.3 1.0
N B:ASN72 4.5 41.0 1.0
CA B:CYS73 4.5 37.3 1.0
CA B:GLN71 4.7 44.3 1.0
N B:GLN71 4.7 46.2 1.0
CA B:CYS83 4.8 37.8 1.0
CB B:ARG69 4.8 47.4 1.0
C B:GLN71 4.8 41.1 1.0
CB B:HIS85 5.0 34.2 1.0
CG B:ARG69 5.0 50.7 1.0
C B:CYS67 5.0 42.7 1.0

Zinc binding site 5 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 5 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn201

b:52.7
occ:1.00
 SG C:CYS34 2.2 55.6 1.0
SG C:CYS51 2.3 54.6 1.0
SG C:CYS48 2.4 54.3 1.0
SG C:CYS31 2.5 52.6 1.0
CB C:CYS34 3.2 52.3 1.0
CB C:CYS51 3.3 51.4 1.0
CB C:CYS31 3.5 61.7 1.0
CB C:CYS48 3.5 57.1 1.0
N C:CYS34 3.6 56.0 1.0
CA C:CYS34 4.0 54.6 1.0
N C:CYS48 4.0 53.5 1.0
N C:CYS51 4.2 51.1 1.0
CA C:CYS48 4.4 55.2 1.0
CA C:CYS51 4.4 50.3 1.0
CB C:ILE33 4.4 54.2 1.0
C C:ILE33 4.6 55.5 1.0
C C:CYS34 4.7 58.7 1.0
N C:GLY35 4.8 60.1 1.0
CB C:ASP36 4.8 67.7 1.0
NH2 C:ARG87 4.8 49.1 1.0
CA C:CYS31 4.9 62.4 1.0
CA C:ILE33 4.9 53.4 1.0
N C:ASP36 4.9 63.7 1.0
N C:ILE33 4.9 53.4 1.0

Zinc binding site 6 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 6 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn202

b:64.0
occ:1.00
 SG C:CYS67 2.5 76.3 1.0
SG C:CYS86 2.5 62.4 1.0
SG C:CYS83 2.6 66.6 1.0
SG C:CYS73 2.7 68.2 1.0
CB C:CYS86 3.5 57.4 1.0
CB C:CYS83 3.6 67.1 1.0
CB C:CYS73 3.6 68.3 1.0
CB C:CYS67 3.7 75.9 1.0
N C:CYS86 4.3 55.7 1.0
N C:CYS73 4.3 74.5 1.0
CA C:GLN71 4.4 73.0 1.0
CA C:CYS67 4.5 77.3 1.0
CA C:CYS86 4.5 55.2 1.0
N C:ASN72 4.6 77.1 1.0
N C:GLN71 4.7 73.9 1.0
CA C:CYS73 4.7 72.3 1.0
ND1 C:HIS85 4.8 68.3 1.0
C C:GLN71 4.8 74.5 1.0
CB C:ARG69 4.9 75.1 1.0

Zinc binding site 7 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 7 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn201

b:43.1
occ:1.00
 SG D:CYS51 2.3 42.5 1.0
SG D:CYS34 2.3 41.8 1.0
SG D:CYS48 2.3 40.0 1.0
SG D:CYS31 2.5 49.0 1.0
CB D:CYS51 3.3 41.2 1.0
CB D:CYS48 3.5 42.0 1.0
CB D:CYS34 3.6 39.8 1.0
CB D:CYS31 3.6 50.9 1.0
N D:CYS34 3.7 46.1 1.0
N D:CYS48 3.9 40.7 1.0
N D:CYS51 4.0 43.0 1.0
CB D:ILE33 4.2 47.3 1.0
CA D:CYS34 4.2 44.9 1.0
NH1 D:ARG80 4.2 44.5 1.0
CA D:CYS48 4.3 41.1 1.0
CA D:CYS51 4.3 43.2 1.0
CB D:ASP36 4.6 54.6 1.0
C D:ILE33 4.7 49.4 1.0
N D:GLY35 4.8 48.0 1.0
NH2 D:ARG87 4.8 41.6 1.0
CA D:ILE33 4.8 48.9 1.0
N D:ASP36 4.8 50.5 1.0
C D:CYS48 4.9 39.8 1.0
C D:CYS34 4.9 46.5 1.0
CG1 D:ILE33 4.9 51.3 1.0
N D:ILE33 4.9 50.6 1.0
O D:CYS48 4.9 39.1 1.0
CD D:ARG80 5.0 46.5 1.0
C D:THR47 5.0 43.0 1.0

Zinc binding site 8 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 8 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn202

b:62.1
occ:1.00
 SG D:CYS83 2.3 54.7 1.0
SG D:CYS86 2.4 53.9 1.0
SG D:CYS67 2.4 65.5 1.0
SG D:CYS73 2.5 64.6 1.0
CB D:CYS67 3.4 65.3 1.0
CB D:CYS86 3.4 49.3 1.0
CB D:CYS83 3.5 51.0 1.0
CB D:CYS73 3.7 62.4 1.0
CA D:CYS67 4.2 66.0 1.0
N D:CYS86 4.3 49.8 1.0
CA D:GLN71 4.4 77.0 1.0
CA D:CYS86 4.4 50.0 1.0
N D:GLN71 4.5 79.1 1.0
N D:ASN72 4.6 74.9 1.0
N D:CYS73 4.7 66.5 1.0
C D:GLN71 4.7 74.7 1.0
CA D:CYS73 4.8 65.4 1.0
CA D:CYS83 4.9 48.8 1.0
C D:CYS67 5.0 71.9 1.0
N D:ARG69 5.0 78.8 1.0
C D:ASN72 5.0 72.4 1.0

Reference:

L.Jiang, Y.Chen. Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors To Be Published.
Page generated: Wed Oct 30 15:18:13 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy