Zinc in PDB 7xvn: Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors

Protein crystallography data

The structure of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors, PDB code: 7xvn was solved by Y.Chen, L.Jiang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.00 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 33.627, 64.584, 238.635, 90, 90, 90
R / Rfree (%) 20.8 / 25.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors (pdb code 7xvn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors, PDB code: 7xvn:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 1 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:32.5
occ:1.00
 SG A:CYS34 2.3 39.8 1.0
SG A:CYS51 2.3 38.0 1.0
SG A:CYS31 2.4 33.2 1.0
SG A:CYS48 2.4 33.1 1.0
CB A:CYS51 3.3 34.4 1.0
CB A:CYS31 3.3 34.6 1.0
CB A:CYS34 3.5 38.4 1.0
CB A:CYS48 3.7 33.3 1.0
N A:CYS34 3.8 35.6 1.0
N A:CYS48 4.0 27.0 1.0
N A:CYS51 4.0 34.1 1.0
CA A:CYS34 4.2 37.4 1.0
CB A:ILE33 4.2 40.9 1.0
CA A:CYS51 4.3 33.7 1.0
CA A:CYS48 4.4 29.0 1.0
NH1 A:ARG80 4.4 41.1 1.0
CB A:ASP36 4.7 39.5 1.0
C A:ILE33 4.7 38.0 1.0
NH2 A:ARG87 4.8 33.5 1.0
CA A:CYS31 4.8 35.0 1.0
CA A:ILE33 4.8 39.3 1.0
C A:CYS34 4.8 38.0 1.0
CG1 A:ILE33 4.9 44.9 1.0
N A:ASP36 4.9 38.6 1.0
N A:GLY35 4.9 38.1 1.0
N A:ILE33 4.9 37.8 1.0
CG2 A:ILE33 4.9 39.9 1.0
CD A:ARG80 5.0 41.3 1.0
C A:CYS48 5.0 26.7 1.0

Zinc binding site 2 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 2 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn202

b:52.8
occ:1.00
 SG A:CYS73 2.4 56.8 1.0
SG A:CYS83 2.5 54.7 1.0
SG A:CYS67 2.7 60.4 1.0
SG A:CYS86 2.7 55.0 1.0
CB A:CYS73 3.2 54.4 1.0
CB A:CYS83 3.2 53.7 1.0
CB A:CYS86 3.5 47.5 1.0
N A:CYS73 3.9 57.4 1.0
CB A:CYS67 3.9 62.5 1.0
CA A:CYS73 4.2 56.2 1.0
N A:CYS86 4.4 45.1 1.0
CA A:CYS86 4.5 45.0 1.0
N A:ASN72 4.6 65.9 1.0
CA A:GLN71 4.6 66.2 1.0
CA A:CYS67 4.6 63.1 1.0
CA A:CYS83 4.7 53.0 1.0
N A:GLN71 4.8 69.2 1.0
C A:GLN71 4.9 65.6 1.0
CB A:ARG69 5.0 68.0 1.0

Zinc binding site 3 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 3 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:31.7
occ:1.00
 SG B:CYS51 2.3 32.1 1.0
SG B:CYS34 2.4 30.9 1.0
SG B:CYS48 2.4 30.4 1.0
SG B:CYS31 2.4 30.0 1.0
CB B:CYS51 3.2 32.2 1.0
CB B:CYS31 3.3 33.2 1.0
CB B:CYS48 3.5 31.5 1.0
CB B:CYS34 3.5 32.4 1.0
N B:CYS34 3.8 32.7 1.0
N B:CYS48 3.9 29.2 1.0
N B:CYS51 4.0 25.0 1.0
CA B:CYS34 4.2 34.8 1.0
CA B:CYS51 4.2 30.1 1.0
CA B:CYS48 4.3 30.2 1.0
CB B:ILE33 4.3 35.1 1.0
NH1 B:ARG80 4.4 37.4 1.0
NH2 B:ARG87 4.7 24.3 1.0
C B:ILE33 4.7 34.2 1.0
CA B:CYS31 4.8 33.4 1.0
N B:GLY35 4.8 33.4 1.0
CB B:ASP36 4.8 40.9 1.0
C B:CYS34 4.8 35.7 1.0
C B:CYS48 4.9 33.1 1.0
CA B:ILE33 4.9 34.4 1.0
N B:ASP36 4.9 36.0 1.0
N B:ILE33 4.9 34.4 1.0
O B:CYS48 4.9 35.1 1.0
CD B:ARG80 5.0 34.3 1.0

Zinc binding site 4 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 4 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn202

b:34.9
occ:1.00
 SG B:CYS67 2.3 39.1 1.0
SG B:CYS83 2.3 37.6 1.0
SG B:CYS73 2.4 36.4 1.0
SG B:CYS86 2.4 42.4 1.0
CB B:CYS67 3.3 39.3 1.0
CB B:CYS83 3.3 37.0 1.0
CB B:CYS86 3.4 36.3 1.0
CB B:CYS73 3.6 35.6 1.0
O B:HOH312 3.9 47.0 1.0
N B:CYS73 4.1 38.6 1.0
CA B:CYS67 4.2 41.4 1.0
O B:HOH310 4.2 44.3 1.0
N B:CYS86 4.2 34.8 1.0
ND1 B:HIS85 4.4 34.4 1.0
CA B:CYS86 4.4 34.3 1.0
N B:ASN72 4.5 41.0 1.0
CA B:CYS73 4.5 37.3 1.0
CA B:GLN71 4.7 44.3 1.0
N B:GLN71 4.7 46.2 1.0
CA B:CYS83 4.8 37.8 1.0
CB B:ARG69 4.8 47.4 1.0
C B:GLN71 4.8 41.1 1.0
CB B:HIS85 5.0 34.2 1.0
CG B:ARG69 5.0 50.7 1.0
C B:CYS67 5.0 42.7 1.0

Zinc binding site 5 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 5 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn201

b:52.7
occ:1.00
 SG C:CYS34 2.2 55.6 1.0
SG C:CYS51 2.3 54.6 1.0
SG C:CYS48 2.4 54.3 1.0
SG C:CYS31 2.5 52.6 1.0
CB C:CYS34 3.2 52.3 1.0
CB C:CYS51 3.3 51.4 1.0
CB C:CYS31 3.5 61.7 1.0
CB C:CYS48 3.5 57.1 1.0
N C:CYS34 3.6 56.0 1.0
CA C:CYS34 4.0 54.6 1.0
N C:CYS48 4.0 53.5 1.0
N C:CYS51 4.2 51.1 1.0
CA C:CYS48 4.4 55.2 1.0
CA C:CYS51 4.4 50.3 1.0
CB C:ILE33 4.4 54.2 1.0
C C:ILE33 4.6 55.5 1.0
C C:CYS34 4.7 58.7 1.0
N C:GLY35 4.8 60.1 1.0
CB C:ASP36 4.8 67.7 1.0
NH2 C:ARG87 4.8 49.1 1.0
CA C:CYS31 4.9 62.4 1.0
CA C:ILE33 4.9 53.4 1.0
N C:ASP36 4.9 63.7 1.0
N C:ILE33 4.9 53.4 1.0

Zinc binding site 6 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 6 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn202

b:64.0
occ:1.00
 SG C:CYS67 2.5 76.3 1.0
SG C:CYS86 2.5 62.4 1.0
SG C:CYS83 2.6 66.6 1.0
SG C:CYS73 2.7 68.2 1.0
CB C:CYS86 3.5 57.4 1.0
CB C:CYS83 3.6 67.1 1.0
CB C:CYS73 3.6 68.3 1.0
CB C:CYS67 3.7 75.9 1.0
N C:CYS86 4.3 55.7 1.0
N C:CYS73 4.3 74.5 1.0
CA C:GLN71 4.4 73.0 1.0
CA C:CYS67 4.5 77.3 1.0
CA C:CYS86 4.5 55.2 1.0
N C:ASN72 4.6 77.1 1.0
N C:GLN71 4.7 73.9 1.0
CA C:CYS73 4.7 72.3 1.0
ND1 C:HIS85 4.8 68.3 1.0
C C:GLN71 4.8 74.5 1.0
CB C:ARG69 4.9 75.1 1.0

Zinc binding site 7 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 7 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn201

b:43.1
occ:1.00
 SG D:CYS51 2.3 42.5 1.0
SG D:CYS34 2.3 41.8 1.0
SG D:CYS48 2.3 40.0 1.0
SG D:CYS31 2.5 49.0 1.0
CB D:CYS51 3.3 41.2 1.0
CB D:CYS48 3.5 42.0 1.0
CB D:CYS34 3.6 39.8 1.0
CB D:CYS31 3.6 50.9 1.0
N D:CYS34 3.7 46.1 1.0
N D:CYS48 3.9 40.7 1.0
N D:CYS51 4.0 43.0 1.0
CB D:ILE33 4.2 47.3 1.0
CA D:CYS34 4.2 44.9 1.0
NH1 D:ARG80 4.2 44.5 1.0
CA D:CYS48 4.3 41.1 1.0
CA D:CYS51 4.3 43.2 1.0
CB D:ASP36 4.6 54.6 1.0
C D:ILE33 4.7 49.4 1.0
N D:GLY35 4.8 48.0 1.0
NH2 D:ARG87 4.8 41.6 1.0
CA D:ILE33 4.8 48.9 1.0
N D:ASP36 4.8 50.5 1.0
C D:CYS48 4.9 39.8 1.0
C D:CYS34 4.9 46.5 1.0
CG1 D:ILE33 4.9 51.3 1.0
N D:ILE33 4.9 50.6 1.0
O D:CYS48 4.9 39.1 1.0
CD D:ARG80 5.0 46.5 1.0
C D:THR47 5.0 43.0 1.0

Zinc binding site 8 out of 8 in 7xvn

Go back to Zinc Binding Sites List in 7xvn
Zinc binding site 8 out of 8 in the Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn202

b:62.1
occ:1.00
 SG D:CYS83 2.3 54.7 1.0
SG D:CYS86 2.4 53.9 1.0
SG D:CYS67 2.4 65.5 1.0
SG D:CYS73 2.5 64.6 1.0
CB D:CYS67 3.4 65.3 1.0
CB D:CYS86 3.4 49.3 1.0
CB D:CYS83 3.5 51.0 1.0
CB D:CYS73 3.7 62.4 1.0
CA D:CYS67 4.2 66.0 1.0
N D:CYS86 4.3 49.8 1.0
CA D:GLN71 4.4 77.0 1.0
CA D:CYS86 4.4 50.0 1.0
N D:GLN71 4.5 79.1 1.0
N D:ASN72 4.6 74.9 1.0
N D:CYS73 4.7 66.5 1.0
C D:GLN71 4.7 74.7 1.0
CA D:CYS73 4.8 65.4 1.0
CA D:CYS83 4.9 48.8 1.0
C D:CYS67 5.0 71.9 1.0
N D:ARG69 5.0 78.8 1.0
C D:ASN72 5.0 72.4 1.0

Reference:

L.Jiang, Y.Chen. Structural Basis For Dna Recognition Feature of Retinoid-Related Orphan Receptors To Be Published.
Page generated: Wed Oct 30 15:18:13 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy