Zinc in PDB 7xur: The Cryo-Em Structure of Human Mini-Snapc in Complex with HU6-1 Pse

The binding sites of Zinc atom in the The Cryo-Em Structure of Human Mini-Snapc in Complex with HU6-1 Pse (pdb code 7xur). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Cryo-Em Structure of Human Mini-Snapc in Complex with HU6-1 Pse, PDB code: 7xur:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the The Cryo-Em Structure of Human Mini-Snapc in Complex with HU6-1 Pse


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Cryo-Em Structure of Human Mini-Snapc in Complex with HU6-1 Pse within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1001 b:51.7 occ:1.00 NE2 B:HIS313 2.0 39.7 1.0 NE2 B:HIS319 2.0 36.1 1.0 SG B:CYS317 2.3 41.1 1.0 SG B:CYS221 2.3 45.5 1.0 CE1 B:HIS319 2.9 36.1 1.0 CE1 B:HIS313 2.9 39.7 1.0 CD2 B:HIS313 3.0 39.7 1.0 CD2 B:HIS319 3.1 36.1 1.0 CB B:CYS221 3.3 45.5 1.0 CB B:CYS317 3.7 41.1 1.0 ND1 B:HIS313 4.0 39.7 1.0 CG B:HIS313 4.0 39.7 1.0 ND1 B:HIS319 4.1 36.1 1.0 CG B:HIS319 4.2 36.1 1.0 CB B:SER223 4.6 45.1 1.0 OG B:SER223 4.6 45.1 1.0 C B:CYS317 4.7 41.1 1.0 O B:CYS317 4.7 41.1 1.0 CA B:CYS221 4.7 45.5 1.0 CA B:CYS317 4.8 41.1 1.0 CG B:PRO189 4.9 42.5 1.0 O B:HIS313 5.0 39.7 1.0

Zinc binding site 2 out of 2 in the The Cryo-Em Structure of Human Mini-Snapc in Complex with HU6-1 Pse


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Cryo-Em Structure of Human Mini-Snapc in Complex with HU6-1 Pse within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1002 b:78.4 occ:1.00 SG B:CYS383 2.3 61.0 1.0 SG B:CYS380 2.3 57.9 1.0 SG B:CYS357 2.3 61.6 1.0 SG B:CYS354 2.3 57.0 1.0 CB B:CYS357 2.6 61.6 1.0 N B:CYS357 3.4 61.6 1.0 CA B:CYS357 3.5 61.6 1.0 CB B:CYS383 3.5 61.0 1.0 CB B:CYS354 3.5 57.0 1.0 CB B:CYS380 3.6 57.9 1.0 N B:CYS383 4.2 61.0 1.0 N B:CYS380 4.3 57.9 1.0 CA B:CYS383 4.5 61.0 1.0 CA B:CYS380 4.6 57.9 1.0 C B:VAL356 4.6 61.2 1.0 C B:CYS357 4.7 61.6 1.0 CB B:VAL356 4.7 61.2 1.0 N B:LYS358 4.9 61.0 1.0 CA B:CYS354 4.9 57.0 1.0 CD2 B:TYR360 5.0 57.5 1.0

J.Sun, X.Li, X.Hou, S.Cao, W.Cao, Y.Zhang, J.Song, M.Wang, H.Wang, X.Yan, Z.Li, R.G.Roeder, W.Wang. Structural Basis of Human Snapc Recognizing Proximal Sequence Element of Snrna Promoter. Nat Commun V. 13 6871 2022.
ISSN: ESSN 2041-1723
PubMed: 36369505
DOI: 10.1038/S41467-022-34639-1