Zinc in PDB 7xt4: Structure of Craspase-Ntr

The binding sites of Zinc atom in the Structure of Craspase-Ntr (pdb code 7xt4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of Craspase-Ntr, PDB code: 7xt4:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Structure of Craspase-Ntr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Craspase-Ntr within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1801 b:55.3 occ:1.00 SG B:CYS88 2.4 41.9 1.0 SG B:CYS127 2.4 42.3 1.0 SG B:CYS121 2.4 51.3 1.0 SG B:CYS130 2.5 38.2 1.0 CB B:CYS127 3.1 42.3 1.0 CB B:CYS130 3.3 38.2 1.0 CB B:CYS88 3.6 41.9 1.0 CB B:CYS121 3.8 51.3 1.0 N B:CYS127 3.8 42.3 1.0 CA B:CYS127 4.0 42.3 1.0 N B:CYS88 4.1 41.9 1.0 N B:CYS130 4.2 38.2 1.0 CA B:CYS130 4.3 38.2 1.0 CA B:CYS88 4.4 41.9 1.0 C B:CYS127 4.7 42.3 1.0 ND2 B:ASN117 4.8 60.5 1.0 O B:CYS127 4.8 42.3 1.0 C B:ALA126 4.9 43.8 1.0 C B:CYS88 5.0 41.9 1.0

Zinc binding site 2 out of 4 in the Structure of Craspase-Ntr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Craspase-Ntr within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1802 b:63.2 occ:1.00 SG B:CYS491 2.4 39.4 1.0 SG B:CYS506 2.5 35.0 1.0 SG B:CYS501 2.5 40.0 1.0 SG B:CYS503 2.5 37.9 1.0 CB B:CYS501 2.9 40.0 1.0 CB B:CYS506 3.0 35.0 1.0 CB B:CYS491 3.6 39.4 1.0 CB B:CYS503 3.6 37.9 1.0 N B:CYS503 4.1 37.9 1.0 CA B:CYS501 4.2 40.0 1.0 CA B:CYS506 4.3 35.0 1.0 C B:CYS501 4.3 40.0 1.0 N B:CYS506 4.3 35.0 1.0 CA B:CYS503 4.4 37.9 1.0 O B:CYS501 4.4 40.0 1.0 N B:ASN502 4.8 39.1 1.0 CA B:CYS491 4.8 39.4 1.0 N B:CYS491 4.8 39.4 1.0 O B:CYS503 4.9 37.9 1.0 C B:CYS503 4.9 37.9 1.0

Zinc binding site 3 out of 4 in the Structure of Craspase-Ntr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Craspase-Ntr within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1803 b:65.5 occ:1.00 ND1 B:HIS747 2.2 55.4 1.0 SG B:CYS750 2.5 54.8 1.0 SG B:CYS752 2.5 48.1 1.0 SG B:CYS755 2.5 44.1 1.0 CE1 B:HIS747 2.7 55.4 1.0 CB B:CYS750 3.1 54.8 1.0 CB B:CYS755 3.1 44.1 1.0 CG B:HIS747 3.3 55.4 1.0 CB B:CYS752 3.4 48.1 1.0 N B:CYS752 3.8 48.1 1.0 NE2 B:HIS747 3.9 55.4 1.0 CB B:HIS747 4.0 55.4 1.0 N B:CYS755 4.1 44.1 1.0 CA B:CYS752 4.2 48.1 1.0 CD2 B:HIS747 4.2 55.4 1.0 CA B:CYS755 4.2 44.1 1.0 CA B:CYS750 4.4 54.8 1.0 C B:CYS750 4.4 54.8 1.0 CA B:HIS747 4.5 55.4 1.0 N B:THR751 4.6 49.8 1.0 C B:CYS752 4.8 48.1 1.0 O B:CYS750 4.8 54.8 1.0 O B:CYS752 4.8 48.1 1.0 CD B:LYS744 4.8 54.3 1.0 CE B:LYS744 4.8 54.3 1.0 O B:HIS747 4.9 55.4 1.0 C B:THR751 5.0 49.8 1.0

Zinc binding site 4 out of 4 in the Structure of Craspase-Ntr


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of Craspase-Ntr within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1804 b:63.8 occ:1.00 SG B:CYS1414 2.4 40.0 1.0 SG B:CYS1417 2.5 37.0 1.0 SG B:CYS1406 2.5 45.0 1.0 SG B:CYS1018 2.5 43.5 1.0 CB B:CYS1417 3.2 37.0 1.0 CB B:CYS1406 3.4 45.0 1.0 CB B:CYS1414 3.6 40.0 1.0 N B:CYS1406 3.9 45.0 1.0 CB B:CYS1018 3.9 43.5 1.0 N B:CYS1414 4.1 40.0 1.0 CA B:CYS1406 4.3 45.0 1.0 CA B:CYS1417 4.4 37.0 1.0 N B:CYS1417 4.4 37.0 1.0 CA B:CYS1414 4.4 40.0 1.0 N B:CYS1018 4.6 43.5 1.0 CA B:CYS1018 4.8 43.5 1.0 NH2 B:ARG935 4.9 42.5 1.0 O B:CYS1018 4.9 43.5 1.0 C B:PRO1405 5.0 42.8 1.0 O B:CYS1414 5.0 40.0 1.0

X.Liu, L.Zhang, H.Wang, Y.Xiu, L.Huang, Z.Gao, N.Li, F.Li, W.Xiong, T.Gao, Y.Zhang, M.Yang, Y.Feng. Target Rna Activates the Protease Activity of Craspase to Confer Antiviral Defense. Mol.Cell V. 82 4503 2022.
ISSN: ISSN 1097-2765
PubMed: 36306795
DOI: 10.1016/J.MOLCEL.2022.10.007