Zinc in PDB 7xso: Structure of the Type III-E Crispr-Cas Effector Gramp

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Type III-E Crispr-Cas Effector Gramp (pdb code 7xso). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structure of the Type III-E Crispr-Cas Effector Gramp, PDB code: 7xso:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 7xso

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Zinc binding site 1 out of 4 in the Structure of the Type III-E Crispr-Cas Effector Gramp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Type III-E Crispr-Cas Effector Gramp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1801

b:80.5
occ:1.00
SG A:CYS127 2.4 55.8 1.0
SG A:CYS88 2.4 56.8 1.0
SG A:CYS130 2.4 54.2 1.0
SG A:CYS121 2.5 61.9 1.0
CB A:CYS127 3.2 55.8 1.0
CB A:CYS88 3.5 56.8 1.0
CB A:CYS130 3.6 54.2 1.0
CB A:CYS121 3.7 61.9 1.0
N A:CYS88 4.0 56.8 1.0
N A:CYS127 4.2 55.8 1.0
N A:CYS130 4.2 54.2 1.0
CA A:CYS88 4.2 56.8 1.0
CA A:CYS127 4.3 55.8 1.0
CA A:CYS130 4.5 54.2 1.0
C A:CYS88 4.7 56.8 1.0
O A:CYS88 4.8 56.8 1.0
NH1 A:ARG135 4.8 51.8 1.0
C A:CYS127 4.9 55.8 1.0

Zinc binding site 2 out of 4 in 7xso

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Zinc binding site 2 out of 4 in the Structure of the Type III-E Crispr-Cas Effector Gramp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Type III-E Crispr-Cas Effector Gramp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1802

b:86.1
occ:1.00
SG A:CYS491 2.4 54.9 1.0
SG A:CYS506 2.4 50.9 1.0
SG A:CYS503 2.5 54.5 1.0
SG A:CYS501 2.5 55.0 1.0
CB A:CYS506 3.3 50.9 1.0
CB A:CYS503 3.3 54.5 1.0
CB A:CYS491 3.5 54.9 1.0
CB A:CYS501 3.6 55.0 1.0
N A:CYS506 4.2 50.9 1.0
N A:CYS491 4.2 54.9 1.0
CA A:CYS506 4.3 50.9 1.0
N A:CYS503 4.3 54.5 1.0
CA A:CYS503 4.4 54.5 1.0
CA A:CYS491 4.4 54.9 1.0
O A:CYS491 4.8 54.9 1.0
C A:CYS491 4.9 54.9 1.0
C A:CYS503 4.9 54.5 1.0
CA A:CYS501 4.9 55.0 1.0
O A:CYS503 5.0 54.5 1.0

Zinc binding site 3 out of 4 in 7xso

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Zinc binding site 3 out of 4 in the Structure of the Type III-E Crispr-Cas Effector Gramp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the Type III-E Crispr-Cas Effector Gramp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1803

b:81.4
occ:1.00
ND1 A:HIS747 2.1 67.5 1.0
CE1 A:HIS747 2.4 67.5 1.0
SG A:CYS752 2.4 60.5 1.0
SG A:CYS750 2.4 67.6 1.0
SG A:CYS755 2.5 54.7 1.0
CB A:CYS750 3.2 67.6 1.0
CB A:CYS755 3.4 54.7 1.0
CB A:CYS752 3.4 60.5 1.0
CG A:HIS747 3.5 67.5 1.0
NE2 A:HIS747 3.7 67.5 1.0
N A:CYS752 4.0 60.5 1.0
CD2 A:HIS747 4.2 67.5 1.0
CA A:CYS752 4.3 60.5 1.0
CB A:HIS747 4.3 67.5 1.0
N A:CYS755 4.4 54.7 1.0
CA A:CYS755 4.5 54.7 1.0
CA A:CYS750 4.6 67.6 1.0
CA A:HIS747 4.6 67.5 1.0
N A:THR751 4.7 64.5 1.0
NZ A:LYS744 4.8 65.8 1.0
O A:HIS747 4.8 67.5 1.0
C A:CYS750 4.8 67.6 1.0
CD A:LYS744 4.9 65.8 1.0
C A:CYS752 4.9 60.5 1.0
CG A:MET754 5.0 54.4 1.0

Zinc binding site 4 out of 4 in 7xso

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Zinc binding site 4 out of 4 in the Structure of the Type III-E Crispr-Cas Effector Gramp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of the Type III-E Crispr-Cas Effector Gramp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1804

b:65.6
occ:1.00
SG A:CYS1406 2.4 50.9 1.0
SG A:CYS1018 2.4 44.9 1.0
SG A:CYS1414 2.4 45.7 1.0
SG A:CYS1417 2.5 43.0 1.0
CB A:CYS1414 2.8 45.7 1.0
CB A:CYS1417 3.2 43.0 1.0
N A:CYS1414 3.6 45.7 1.0
CB A:CYS1018 3.7 44.9 1.0
CB A:CYS1406 3.7 50.9 1.0
CA A:CYS1414 3.8 45.7 1.0
N A:CYS1417 4.1 43.0 1.0
NH1 A:ARG935 4.2 47.8 1.0
CA A:CYS1417 4.3 43.0 1.0
N A:CYS1406 4.4 50.9 1.0
N A:CYS1018 4.5 44.9 1.0
C A:CYS1414 4.5 45.7 1.0
O A:CYS1414 4.6 45.7 1.0
CA A:CYS1406 4.7 50.9 1.0
CA A:CYS1018 4.7 44.9 1.0
C A:LEU1413 4.9 45.5 1.0

Reference:

X.Liu, L.Zhang, H.Wang, Y.Xiu, L.Huang, Z.Gao, N.Li, F.Li, W.Xiong, T.Gao, Y.Zhang, M.Yang, Y.Feng. Target Rna Activates the Protease Activity of Craspase to Confer Antiviral Defense. Mol.Cell V. 82 4503 2022.
ISSN: ISSN 1097-2765
PubMed: 36306795
DOI: 10.1016/J.MOLCEL.2022.10.007
Page generated: Tue Apr 11 18:15:38 2023

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