Zinc in PDB 7x01: Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha

Other elements in 7x01:

The structure of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha also contains other interesting chemical elements:

Fluorine (F) 12 atoms

Zinc Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha (pdb code 7x01). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha, PDB code: 7x01:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 12 in 7x01

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Zinc binding site 1 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:108.4
occ:1.00
 NE2 A:HIS79 2.3 67.0 1.0
SG A:CYS141 2.3 63.2 1.0
SG A:CYS134 2.3 72.5 1.0
OE2 A:GLU129 2.4 74.5 1.0
OE1 A:GLU129 2.5 74.5 1.0
CD A:GLU129 2.7 74.5 1.0
CB A:CYS134 2.9 72.5 1.0
CE1 A:HIS79 2.9 67.0 1.0
CD2 A:HIS79 3.5 67.0 1.0
CB A:CYS141 3.6 63.2 1.0
CB A:GLN143 4.1 66.7 1.0
ND1 A:HIS79 4.2 67.0 1.0
CG A:GLU129 4.2 74.5 1.0
CA A:CYS141 4.4 63.2 1.0
CA A:CYS134 4.4 72.5 1.0
CG A:HIS79 4.5 67.0 1.0
CG2 A:VAL81 4.6 68.3 1.0
N A:GLN143 4.7 66.7 1.0
ND1 A:HIS136 4.7 69.6 1.0
N A:CYS134 4.8 72.5 1.0
O A:PHE133 4.8 71.3 1.0
N A:ARG142 4.8 66.3 1.0
C A:PHE133 5.0 71.3 1.0
CB A:GLU129 5.0 74.5 1.0
C A:CYS141 5.0 63.2 1.0

Zinc binding site 2 out of 12 in 7x01

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Zinc binding site 2 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1001

b:113.4
occ:1.00
 NE2 B:HIS79 2.3 69.8 1.0
SG B:CYS134 2.3 70.9 1.0
SG B:CYS141 2.3 64.9 1.0
OE2 B:GLU129 2.5 77.5 1.0
OE1 B:GLU129 2.5 77.5 1.0
CD B:GLU129 2.8 77.5 1.0
CB B:CYS134 2.9 70.9 1.0
CE1 B:HIS79 3.0 69.8 1.0
CD2 B:HIS79 3.5 69.8 1.0
CB B:CYS141 3.6 64.9 1.0
CB B:GLN143 4.1 69.6 1.0
ND1 B:HIS79 4.2 69.8 1.0
CG B:GLU129 4.3 77.5 1.0
CA B:CYS134 4.4 70.9 1.0
CA B:CYS141 4.4 64.9 1.0
CG B:HIS79 4.5 69.8 1.0
CG2 B:VAL81 4.5 66.4 1.0
N B:GLN143 4.7 69.6 1.0
N B:CYS134 4.7 70.9 1.0
O B:PHE133 4.8 71.4 1.0
ND1 B:HIS136 4.8 70.2 1.0
N B:ARG142 4.9 69.5 1.0
C B:PHE133 4.9 71.4 1.0

Zinc binding site 3 out of 12 in 7x01

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Zinc binding site 3 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1001

b:114.0
occ:1.00
 NE2 C:HIS79 2.3 68.5 1.0
SG C:CYS134 2.3 70.4 1.0
SG C:CYS141 2.3 66.8 1.0
OE1 C:GLU129 2.5 76.4 1.0
OE2 C:GLU129 2.5 76.4 1.0
CD C:GLU129 2.8 76.4 1.0
CB C:CYS134 2.9 70.4 1.0
CE1 C:HIS79 2.9 68.5 1.0
CD2 C:HIS79 3.5 68.5 1.0
CB C:CYS141 3.6 66.8 1.0
CB C:GLN143 4.1 68.9 1.0
ND1 C:HIS79 4.2 68.5 1.0
CG C:GLU129 4.3 76.4 1.0
CA C:CYS134 4.4 70.4 1.0
CG2 C:VAL81 4.4 68.3 1.0
CA C:CYS141 4.4 66.8 1.0
CG C:HIS79 4.5 68.5 1.0
ND1 C:HIS136 4.7 71.7 1.0
N C:GLN143 4.7 68.9 1.0
N C:CYS134 4.7 70.4 1.0
O C:PHE133 4.8 70.1 1.0
N C:ARG142 4.9 69.6 1.0
C C:PHE133 4.9 70.1 1.0

Zinc binding site 4 out of 12 in 7x01

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Zinc binding site 4 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1001

b:106.7
occ:1.00
 NE2 D:HIS79 2.3 66.5 1.0
SG D:CYS134 2.3 71.4 1.0
SG D:CYS141 2.3 62.3 1.0
OE2 D:GLU129 2.4 74.1 1.0
OE1 D:GLU129 2.5 74.1 1.0
CD D:GLU129 2.8 74.1 1.0
CB D:CYS134 3.0 71.4 1.0
CE1 D:HIS79 3.0 66.5 1.0
CD2 D:HIS79 3.5 66.5 1.0
CB D:CYS141 3.6 62.3 1.0
CB D:GLN143 4.1 65.2 1.0
ND1 D:HIS79 4.2 66.5 1.0
CG D:GLU129 4.2 74.1 1.0
CA D:CYS141 4.4 62.3 1.0
CA D:CYS134 4.4 71.4 1.0
CG D:HIS79 4.5 66.5 1.0
CG2 D:VAL81 4.6 67.8 1.0
N D:GLN143 4.7 65.2 1.0
ND1 D:HIS136 4.7 69.0 1.0
N D:CYS134 4.8 71.4 1.0
O D:PHE133 4.8 70.4 1.0
N D:ARG142 4.8 65.5 1.0
C D:PHE133 5.0 70.4 1.0

Zinc binding site 5 out of 12 in 7x01

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Zinc binding site 5 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn1001

b:114.5
occ:1.00
 NE2 E:HIS79 2.3 70.3 1.0
SG E:CYS134 2.3 70.2 1.0
SG E:CYS141 2.3 64.9 1.0
OE2 E:GLU129 2.4 78.0 1.0
OE1 E:GLU129 2.5 78.0 1.0
CD E:GLU129 2.8 78.0 1.0
CE1 E:HIS79 3.0 70.3 1.0
CB E:CYS134 3.0 70.2 1.0
CD2 E:HIS79 3.5 70.3 1.0
CB E:CYS141 3.6 64.9 1.0
CB E:GLN143 4.1 71.2 1.0
ND1 E:HIS79 4.2 70.3 1.0
CG E:GLU129 4.3 78.0 1.0
CA E:CYS141 4.4 64.9 1.0
CA E:CYS134 4.4 70.2 1.0
CG E:HIS79 4.5 70.3 1.0
CG2 E:VAL81 4.5 66.1 1.0
N E:GLN143 4.7 71.2 1.0
N E:CYS134 4.7 70.2 1.0
ND1 E:HIS136 4.8 69.5 1.0
O E:PHE133 4.8 71.2 1.0
N E:ARG142 4.9 70.1 1.0
C E:PHE133 4.9 71.2 1.0

Zinc binding site 6 out of 12 in 7x01

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Zinc binding site 6 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn1001

b:113.6
occ:1.00
 NE2 F:HIS79 2.3 67.9 1.0
SG F:CYS134 2.3 69.6 1.0
SG F:CYS141 2.3 65.2 1.0
OE2 F:GLU129 2.4 75.5 1.0
OE1 F:GLU129 2.5 75.5 1.0
CD F:GLU129 2.8 75.5 1.0
CB F:CYS134 2.9 69.6 1.0
CE1 F:HIS79 3.0 67.9 1.0
CD2 F:HIS79 3.5 67.9 1.0
CB F:CYS141 3.6 65.2 1.0
CB F:GLN143 4.1 68.1 1.0
ND1 F:HIS79 4.2 67.9 1.0
CG F:GLU129 4.3 75.5 1.0
CA F:CYS141 4.4 65.2 1.0
CA F:CYS134 4.4 69.6 1.0
CG F:HIS79 4.5 67.9 1.0
CG2 F:VAL81 4.5 68.4 1.0
N F:GLN143 4.7 68.1 1.0
N F:CYS134 4.7 69.6 1.0
ND1 F:HIS136 4.8 70.5 1.0
O F:PHE133 4.8 69.6 1.0
N F:ARG142 4.9 68.5 1.0
C F:PHE133 4.9 69.6 1.0
C F:CYS141 5.0 65.2 1.0

Zinc binding site 7 out of 12 in 7x01

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Zinc binding site 7 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn1001

b:110.9
occ:1.00
 NE2 G:HIS79 2.3 66.5 1.0
SG G:CYS134 2.3 71.3 1.0
SG G:CYS141 2.3 62.6 1.0
OE2 G:GLU129 2.4 74.5 1.0
OE1 G:GLU129 2.5 74.5 1.0
CD G:GLU129 2.8 74.5 1.0
CE1 G:HIS79 3.0 66.5 1.0
CB G:CYS134 3.0 71.3 1.0
CD2 G:HIS79 3.5 66.5 1.0
CB G:CYS141 3.6 62.6 1.0
CB G:GLN143 4.1 67.0 1.0
ND1 G:HIS79 4.2 66.5 1.0
CG G:GLU129 4.3 74.5 1.0
CA G:CYS141 4.4 62.6 1.0
CA G:CYS134 4.4 71.3 1.0
CG G:HIS79 4.5 66.5 1.0
CG2 G:VAL81 4.6 67.8 1.0
N G:GLN143 4.7 67.0 1.0
ND1 G:HIS136 4.7 69.2 1.0
N G:CYS134 4.8 71.3 1.0
O G:PHE133 4.8 70.7 1.0
N G:ARG142 4.8 65.9 1.0
C G:PHE133 5.0 70.7 1.0

Zinc binding site 8 out of 12 in 7x01

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Zinc binding site 8 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn1001

b:112.2
occ:1.00
 NE2 H:HIS79 2.3 70.4 1.0
SG H:CYS134 2.3 70.4 1.0
SG H:CYS141 2.3 66.2 1.0
OE2 H:GLU129 2.4 79.3 1.0
OE1 H:GLU129 2.5 79.3 1.0
CD H:GLU129 2.8 79.3 1.0
CB H:CYS134 2.9 70.4 1.0
CE1 H:HIS79 3.0 70.4 1.0
CD2 H:HIS79 3.5 70.4 1.0
CB H:CYS141 3.6 66.2 1.0
CB H:GLN143 4.1 71.6 1.0
ND1 H:HIS79 4.2 70.4 1.0
CG H:GLU129 4.3 79.3 1.0
CA H:CYS141 4.3 66.2 1.0
CA H:CYS134 4.4 70.4 1.0
CG H:HIS79 4.5 70.4 1.0
CG2 H:VAL81 4.5 66.2 1.0
ND1 H:HIS136 4.7 69.0 1.0
N H:GLN143 4.7 71.6 1.0
N H:CYS134 4.7 70.4 1.0
O H:PHE133 4.8 71.3 1.0
N H:ARG142 4.9 71.5 1.0
C H:PHE133 5.0 71.3 1.0

Zinc binding site 9 out of 12 in 7x01

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Zinc binding site 9 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn1001

b:116.5
occ:1.00
 NE2 I:HIS79 2.3 68.3 1.0
SG I:CYS134 2.3 71.1 1.0
SG I:CYS141 2.3 67.0 1.0
OE2 I:GLU129 2.5 77.3 1.0
OE1 I:GLU129 2.5 77.3 1.0
CD I:GLU129 2.8 77.3 1.0
CB I:CYS134 2.9 71.1 1.0
CE1 I:HIS79 3.0 68.3 1.0
CD2 I:HIS79 3.5 68.3 1.0
CB I:CYS141 3.6 67.0 1.0
CB I:GLN143 4.1 68.4 1.0
ND1 I:HIS79 4.2 68.3 1.0
CG I:GLU129 4.3 77.3 1.0
CA I:CYS134 4.4 71.1 1.0
CA I:CYS141 4.4 67.0 1.0
CG2 I:VAL81 4.4 68.4 1.0
CG I:HIS79 4.5 68.3 1.0
ND1 I:HIS136 4.6 73.2 1.0
N I:GLN143 4.7 68.4 1.0
N I:CYS134 4.8 71.1 1.0
O I:PHE133 4.8 70.7 1.0
N I:ARG142 4.9 69.6 1.0
C I:PHE133 5.0 70.7 1.0

Zinc binding site 10 out of 12 in 7x01

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Zinc binding site 10 out of 12 in the Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Cryo-Em Structure of Chikungunya Virus Nonstructural Protein 1 with Inhibitor Fha within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn1001

b:109.7
occ:1.00
 NE2 J:HIS79 2.3 67.0 1.0
SG J:CYS134 2.3 72.0 1.0
SG J:CYS141 2.3 63.4 1.0
OE2 J:GLU129 2.4 74.9 1.0
OE1 J:GLU129 2.5 74.9 1.0
CD J:GLU129 2.8 74.9 1.0
CB J:CYS134 2.9 72.0 1.0
CE1 J:HIS79 2.9 67.0 1.0
CD2 J:HIS79 3.5 67.0 1.0
CB J:CYS141 3.6 63.4 1.0
CB J:GLN143 4.1 67.1 1.0
ND1 J:HIS79 4.2 67.0 1.0
CG J:GLU129 4.3 74.9 1.0
CA J:CYS134 4.4 72.0 1.0
CA J:CYS141 4.4 63.4 1.0
CG J:HIS79 4.5 67.0 1.0
CG2 J:VAL81 4.6 68.6 1.0
N J:GLN143 4.7 67.1 1.0
ND1 J:HIS136 4.7 69.8 1.0
N J:CYS134 4.8 72.0 1.0
O J:PHE133 4.8 71.1 1.0
N J:ARG142 4.8 67.1 1.0
C J:PHE133 5.0 71.1 1.0

Reference:

K.Zhang, M.C.Y.Law, T.M.Nguyen, Y.B.Tan, M.Wirawan, Y.S.Law, L.S.Jeong, D.Luo. Molecular Basis of Specific Viral Rna Recognition and 5'-End Capping By the Chikungunya Virus NSP1. Cell Rep V. 40 11133 2022.
ISSN: ESSN 2211-1247
PubMed: 35905713
DOI: 10.1016/J.CELREP.2022.111133
Page generated: Wed Oct 30 14:39:30 2024

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