Zinc in PDB 7weg: Complex Structure of PDZD7 and FCHSD2

The structure of Complex Structure of PDZD7 and FCHSD2, PDB code: 7weg was solved by H.Wang, L.Lin, Q.Lu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.68 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	41.603, 62.918, 46.03, 90, 95.19, 90
R / Rfree (%)	20.9 / 25.6

The binding sites of Zinc atom in the Complex Structure of PDZD7 and FCHSD2 (pdb code 7weg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Complex Structure of PDZD7 and FCHSD2, PDB code: 7weg:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Complex Structure of PDZD7 and FCHSD2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Complex Structure of PDZD7 and FCHSD2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1001 b:32.1 occ:1.00 O A:HOH1127 1.9 18.1 1.0 OE1 A:GLU877 2.1 27.4 1.0 OE2 A:GLU877 2.5 26.3 1.0 CD A:GLU877 2.6 31.3 1.0 O A:HOH1113 3.7 22.2 1.0 CG A:GLU877 4.0 25.5 1.0 O A:HOH1151 4.6 47.9 1.0 CB A:GLU877 4.8 28.1 1.0

Zinc binding site 2 out of 4 in the Complex Structure of PDZD7 and FCHSD2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Complex Structure of PDZD7 and FCHSD2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1002 b:65.0 occ:1.00 OE2 A:GLU916 2.0 43.8 1.0 OE1 A:GLU906 2.2 41.0 1.0 O A:HOH1137 2.6 29.7 1.0 CD A:GLU906 3.0 31.4 1.0 CD A:GLU916 3.1 42.9 1.0 O A:HOH1115 3.1 39.9 1.0 CG A:GLU906 3.4 29.1 1.0 OE1 A:GLU916 3.6 44.9 1.0 O A:LEU907 3.7 37.6 1.0 OE2 A:GLU906 4.0 34.2 1.0 CB A:MET883 4.1 34.4 1.0 CG A:GLU916 4.3 29.7 1.0 CA A:GLU916 4.4 42.5 1.0 CG2 A:VAL908 4.4 30.9 1.0 C A:LEU907 4.6 30.7 1.0 CA A:VAL908 4.7 24.0 1.0 CA A:MET883 4.7 32.6 1.0 CB A:GLU916 4.8 30.8 1.0 O A:LEU915 4.8 33.1 1.0 CB A:GLU906 4.9 25.3 1.0 N A:VAL884 4.9 23.4 1.0

Zinc binding site 3 out of 4 in the Complex Structure of PDZD7 and FCHSD2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Complex Structure of PDZD7 and FCHSD2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1001 b:33.1 occ:1.00 OE2 B:GLU877 2.2 32.4 1.0 CD B:GLU877 2.6 29.5 1.0 OE1 B:GLU877 2.7 26.0 1.0 O B:HOH1110 3.7 24.6 1.0 CG B:GLU877 4.0 28.8 1.0 CB B:GLU877 4.8 26.2 1.0

Zinc binding site 4 out of 4 in the Complex Structure of PDZD7 and FCHSD2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Complex Structure of PDZD7 and FCHSD2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1002 b:66.6 occ:1.00 OE2 B:GLU906 1.9 37.6 1.0 OE1 B:GLU916 2.2 38.6 1.0 O B:HOH1125 2.7 37.2 1.0 CD B:GLU906 2.9 35.8 1.0 O B:HOH1121 3.1 39.7 1.0 CD B:GLU916 3.3 44.2 1.0 CG B:GLU906 3.4 32.4 1.0 O B:LEU907 3.7 34.7 1.0 OE1 B:GLU906 3.9 35.0 1.0 OE2 B:GLU916 3.9 47.2 1.0 CB B:MET883 4.0 30.5 1.0 CA B:GLU916 4.4 32.1 1.0 O B:HOH1101 4.4 38.6 1.0 CG B:GLU916 4.5 34.2 1.0 CA B:MET883 4.6 28.7 1.0 O B:LEU915 4.7 29.9 1.0 CG2 B:VAL908 4.7 33.8 1.0 C B:LEU907 4.7 28.0 1.0 N B:VAL884 4.8 23.3 1.0 CB B:GLU916 4.9 27.8 1.0 CB B:GLU906 4.9 24.0 1.0 CA B:VAL908 4.9 28.9 1.0 N B:GLN917 5.0 28.8 1.0

H.Wang, D.Zhao, H.Du, X.Zhai, S.Wu, L.Lin, Z.Xu, Q.Lu. Deafness-Related Protein PDZD7 Forms Complex with the C-Terminal Tail of FCHSD2. Biochem.J. V. 479 1393 2022.
ISSN: ESSN 1470-8728
PubMed: 35695292
DOI: 10.1042/BCJ20220147