Zinc in PDB 7wbw: Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome
Enzymatic activity of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome
All present enzymatic activity of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome:
2.7.7.6;
Other elements in 7wbw:
The structure of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome also contains other interesting chemical elements:
Zinc Binding Sites:
The binding sites of Zinc atom in the Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome
(pdb code 7wbw). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 10 binding sites of Zinc where determined in the
Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome, PDB code: 7wbw:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 10 in 7wbw
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Zinc Binding Sites List in 7wbw
Zinc binding site 1 out
of 10 in the Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn1801
b:435.5
occ:1.00
|
HG
|
A:CYS67
|
1.3
|
249.5
|
1.0
|
|
NE2
|
A:HIS80
|
2.1
|
288.1
|
1.0
|
|
SG
|
A:CYS67
|
2.3
|
249.5
|
1.0
|
|
SG
|
A:CYS77
|
2.3
|
294.4
|
1.0
|
|
SG
|
A:CYS70
|
2.3
|
257.8
|
1.0
|
|
HB3
|
A:CYS67
|
2.6
|
249.5
|
1.0
|
|
HG
|
A:CYS70
|
2.6
|
257.8
|
1.0
|
|
HB3
|
A:CYS70
|
2.6
|
257.8
|
1.0
|
|
HG
|
A:CYS77
|
2.7
|
294.4
|
1.0
|
|
CB
|
A:CYS67
|
2.7
|
249.5
|
1.0
|
|
H
|
A:CYS70
|
2.7
|
257.8
|
1.0
|
|
HB2
|
A:CYS67
|
2.8
|
249.5
|
1.0
|
|
HB2
|
A:CYS77
|
3.0
|
294.4
|
1.0
|
|
CB
|
A:CYS70
|
3.0
|
257.8
|
1.0
|
|
CD2
|
A:HIS80
|
3.0
|
288.1
|
1.0
|
|
CE1
|
A:HIS80
|
3.1
|
288.1
|
1.0
|
|
HD2
|
A:HIS80
|
3.1
|
288.1
|
1.0
|
|
CB
|
A:CYS77
|
3.2
|
294.4
|
1.0
|
|
HE1
|
A:HIS80
|
3.4
|
288.1
|
1.0
|
|
HA
|
A:CYS77
|
3.4
|
294.4
|
1.0
|
|
N
|
A:CYS70
|
3.5
|
257.8
|
1.0
|
|
HA2
|
A:GLY59
|
3.5
|
267.5
|
1.0
|
|
HB
|
A:THR69
|
3.7
|
254.1
|
1.0
|
|
HB2
|
A:CYS70
|
3.8
|
257.8
|
1.0
|
|
CA
|
A:CYS70
|
3.8
|
257.8
|
1.0
|
|
CA
|
A:CYS77
|
3.9
|
294.4
|
1.0
|
|
HD2
|
A:PRO78
|
3.9
|
333.8
|
1.0
|
|
O
|
A:GLU72
|
4.0
|
248.3
|
1.0
|
|
H
|
A:GLY79
|
4.0
|
315.9
|
1.0
|
|
HB3
|
A:CYS77
|
4.0
|
294.4
|
1.0
|
|
H
|
A:GLU72
|
4.2
|
248.3
|
1.0
|
|
CG
|
A:HIS80
|
4.2
|
288.1
|
1.0
|
|
ND1
|
A:HIS80
|
4.2
|
288.1
|
1.0
|
|
CA
|
A:CYS67
|
4.2
|
249.5
|
1.0
|
|
CA
|
A:GLY59
|
4.5
|
267.5
|
1.0
|
|
H
|
A:SER60
|
4.5
|
250.8
|
1.0
|
|
H
|
A:THR69
|
4.5
|
254.1
|
1.0
|
|
H
|
A:GLY71
|
4.5
|
225.4
|
1.0
|
|
HA
|
A:CYS70
|
4.6
|
257.8
|
1.0
|
|
HA3
|
A:GLY59
|
4.6
|
267.5
|
1.0
|
|
HA
|
A:CYS67
|
4.6
|
249.5
|
1.0
|
|
C
|
A:CYS70
|
4.6
|
257.8
|
1.0
|
|
C
|
A:THR69
|
4.7
|
254.1
|
1.0
|
|
CB
|
A:THR69
|
4.7
|
254.1
|
1.0
|
|
HA2
|
A:GLY79
|
4.7
|
315.9
|
1.0
|
|
CD
|
A:PRO78
|
4.7
|
333.8
|
1.0
|
|
C
|
A:CYS77
|
4.7
|
294.4
|
1.0
|
|
C
|
A:CYS67
|
4.8
|
249.5
|
1.0
|
|
H
|
A:CYS67
|
4.8
|
249.5
|
1.0
|
|
N
|
A:GLY79
|
4.8
|
315.9
|
1.0
|
|
O
|
A:CYS67
|
4.8
|
249.5
|
1.0
|
|
N
|
A:GLY71
|
4.8
|
225.4
|
1.0
|
|
N
|
A:PRO78
|
4.9
|
333.8
|
1.0
|
|
HE22
|
A:GLN246
|
4.9
|
237.9
|
1.0
|
|
HD3
|
A:PRO78
|
4.9
|
333.8
|
1.0
|
|
HB2
|
A:GLU72
|
5.0
|
248.3
|
1.0
|
|
HD1
|
A:HIS80
|
5.0
|
288.1
|
1.0
|
|
N
|
A:GLU72
|
5.0
|
248.3
|
1.0
|
|
N
|
A:CYS77
|
5.0
|
294.4
|
1.0
|
|
Zinc binding site 2 out
of 10 in 7wbw
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Zinc Binding Sites List in 7wbw
Zinc binding site 2 out
of 10 in the Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn1802
b:507.6
occ:1.00
|
H
|
A:CYS110
|
1.5
|
362.9
|
1.0
|
|
HB3
|
A:CYS168
|
1.6
|
373.1
|
1.0
|
|
HB3
|
A:CYS110
|
1.8
|
362.9
|
1.0
|
|
H
|
A:CYS168
|
2.0
|
373.1
|
1.0
|
|
CB
|
A:CYS168
|
2.1
|
373.1
|
1.0
|
|
CB
|
A:CYS110
|
2.2
|
362.9
|
1.0
|
|
N
|
A:CYS110
|
2.2
|
362.9
|
1.0
|
|
SG
|
A:CYS168
|
2.3
|
373.1
|
1.0
|
|
SG
|
A:CYS110
|
2.3
|
362.9
|
1.0
|
|
SG
|
A:CYS107
|
2.3
|
316.1
|
1.0
|
|
HG
|
A:CYS168
|
2.5
|
373.1
|
1.0
|
|
N
|
A:CYS168
|
2.6
|
373.1
|
1.0
|
|
HG
|
A:CYS110
|
2.7
|
362.9
|
1.0
|
|
CA
|
A:CYS110
|
2.7
|
362.9
|
1.0
|
|
CA
|
A:CYS168
|
2.9
|
373.1
|
1.0
|
|
HB3
|
A:ASN109
|
2.9
|
333.6
|
1.0
|
|
HB2
|
A:CYS168
|
3.0
|
373.1
|
1.0
|
|
HG
|
A:CYS107
|
3.0
|
316.1
|
1.0
|
|
HB2
|
A:CYS110
|
3.1
|
362.9
|
1.0
|
|
HA
|
A:CYS110
|
3.3
|
362.9
|
1.0
|
|
H
|
A:ASN109
|
3.4
|
333.6
|
1.0
|
|
C
|
A:ASN109
|
3.4
|
333.6
|
1.0
|
|
HA
|
A:CYS168
|
3.5
|
373.1
|
1.0
|
|
HB3
|
A:CYS107
|
3.5
|
316.1
|
1.0
|
|
CB
|
A:CYS107
|
3.5
|
316.1
|
1.0
|
|
H
|
A:GLY111
|
3.8
|
322.3
|
1.0
|
|
CB
|
A:ASN109
|
3.8
|
333.6
|
1.0
|
|
HA2
|
A:GLY167
|
3.8
|
388.7
|
1.0
|
|
HB2
|
A:CYS107
|
3.8
|
316.1
|
1.0
|
|
C
|
A:GLY167
|
3.8
|
388.7
|
1.0
|
|
C
|
A:CYS110
|
3.9
|
362.9
|
1.0
|
|
CA
|
A:ASN109
|
3.9
|
333.6
|
1.0
|
|
N
|
A:ASN109
|
4.0
|
333.6
|
1.0
|
|
HG
|
A:CYS148
|
4.0
|
347.2
|
1.0
|
|
C
|
A:CYS168
|
4.1
|
373.1
|
1.0
|
|
N
|
A:GLY111
|
4.1
|
322.3
|
1.0
|
|
H
|
A:GLY169
|
4.2
|
352.9
|
1.0
|
|
CA
|
A:GLY167
|
4.3
|
388.7
|
1.0
|
|
SG
|
A:CYS148
|
4.3
|
347.2
|
1.0
|
|
O
|
A:ASN109
|
4.4
|
333.6
|
1.0
|
|
HB2
|
A:ASN109
|
4.4
|
333.6
|
1.0
|
|
HD21
|
A:ASN109
|
4.4
|
333.6
|
1.0
|
|
N
|
A:GLY169
|
4.5
|
352.9
|
1.0
|
|
HA3
|
A:GLY167
|
4.5
|
388.7
|
1.0
|
|
CG
|
A:ASN109
|
4.6
|
333.6
|
1.0
|
|
H
|
A:ASN170
|
4.7
|
289.6
|
1.0
|
|
ND2
|
A:ASN109
|
4.8
|
333.6
|
1.0
|
|
O
|
A:GLY167
|
4.8
|
388.7
|
1.0
|
|
HA
|
A:ASN109
|
4.8
|
333.6
|
1.0
|
|
O
|
A:CYS110
|
4.9
|
362.9
|
1.0
|
|
CA
|
A:CYS107
|
4.9
|
316.1
|
1.0
|
|
SD
|
A:MET108
|
4.9
|
274.5
|
1.0
|
|
HZ3
|
A:LYS112
|
4.9
|
328.5
|
1.0
|
|
HG2
|
A:LYS112
|
5.0
|
328.5
|
1.0
|
|
O
|
A:CYS168
|
5.0
|
373.1
|
1.0
|
|
H
|
A:MET108
|
5.0
|
274.5
|
1.0
|
|
Zinc binding site 3 out
of 10 in 7wbw
Go back to
Zinc Binding Sites List in 7wbw
Zinc binding site 3 out
of 10 in the Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn1301
b:410.6
occ:1.00
|
HG
|
B:CYS1163
|
1.5
|
300.3
|
1.0
|
|
HG
|
B:CYS1185
|
2.0
|
310.1
|
1.0
|
|
SG
|
B:CYS1163
|
2.3
|
300.3
|
1.0
|
|
SG
|
B:CYS1182
|
2.3
|
338.7
|
1.0
|
|
SG
|
B:CYS1166
|
2.3
|
308.3
|
1.0
|
|
SG
|
B:CYS1185
|
2.3
|
310.1
|
1.0
|
|
HB2
|
B:CYS1185
|
2.6
|
310.1
|
1.0
|
|
H
|
B:CYS1166
|
2.6
|
308.3
|
1.0
|
|
HG
|
B:CYS1166
|
2.6
|
308.3
|
1.0
|
|
HB3
|
B:CYS1163
|
2.7
|
300.3
|
1.0
|
|
HB3
|
B:CYS1166
|
2.9
|
308.3
|
1.0
|
|
CB
|
B:CYS1163
|
3.0
|
300.3
|
1.0
|
|
CB
|
B:CYS1185
|
3.0
|
310.1
|
1.0
|
|
CB
|
B:CYS1166
|
3.1
|
308.3
|
1.0
|
|
HG
|
B:CYS1182
|
3.3
|
338.7
|
1.0
|
|
HB3
|
B:CYS1182
|
3.3
|
338.7
|
1.0
|
|
CB
|
B:CYS1182
|
3.3
|
338.7
|
1.0
|
|
HB2
|
B:CYS1163
|
3.4
|
300.3
|
1.0
|
|
N
|
B:CYS1166
|
3.4
|
308.3
|
1.0
|
|
H
|
B:CYS1185
|
3.4
|
310.1
|
1.0
|
|
HB
|
B:ILE1165
|
3.5
|
268.6
|
1.0
|
|
HB2
|
B:CYS1182
|
3.5
|
338.7
|
1.0
|
|
HG
|
B:SER1170
|
3.6
|
389.8
|
1.0
|
|
HB3
|
B:CYS1185
|
3.7
|
310.1
|
1.0
|
|
HB3
|
B:SER1184
|
3.8
|
308.0
|
1.0
|
|
CA
|
B:CYS1166
|
3.9
|
308.3
|
1.0
|
|
N
|
B:CYS1185
|
3.9
|
310.1
|
1.0
|
|
OG
|
B:SER1170
|
3.9
|
389.8
|
1.0
|
|
HB2
|
B:CYS1166
|
4.0
|
308.3
|
1.0
|
|
HB3
|
B:ASN1187
|
4.0
|
299.4
|
1.0
|
|
CA
|
B:CYS1185
|
4.1
|
310.1
|
1.0
|
|
HB2
|
B:ASN1187
|
4.1
|
299.4
|
1.0
|
|
HD21
|
B:ASN1187
|
4.1
|
299.4
|
1.0
|
|
O
|
B:CYS1163
|
4.3
|
300.3
|
1.0
|
|
CA
|
B:CYS1163
|
4.3
|
300.3
|
1.0
|
|
CB
|
B:ILE1165
|
4.4
|
268.6
|
1.0
|
|
H
|
B:GLY1167
|
4.4
|
292.7
|
1.0
|
|
C
|
B:CYS1163
|
4.5
|
300.3
|
1.0
|
|
C
|
B:ILE1165
|
4.5
|
268.6
|
1.0
|
|
HG23
|
B:ILE1165
|
4.5
|
268.6
|
1.0
|
|
H
|
B:ILE1165
|
4.6
|
268.6
|
1.0
|
|
CB
|
B:ASN1187
|
4.6
|
299.4
|
1.0
|
|
HA
|
B:CYS1166
|
4.6
|
308.3
|
1.0
|
|
HA
|
B:CYS1185
|
4.6
|
310.1
|
1.0
|
|
H
|
B:LEU1168
|
4.6
|
326.2
|
1.0
|
|
CB
|
B:SER1184
|
4.7
|
308.0
|
1.0
|
|
H
|
B:ASN1187
|
4.7
|
299.4
|
1.0
|
|
CA
|
B:CYS1182
|
4.8
|
338.7
|
1.0
|
|
C
|
B:SER1184
|
4.8
|
308.0
|
1.0
|
|
HD12
|
B:ILE1165
|
4.8
|
268.6
|
1.0
|
|
N
|
B:ILE1165
|
4.8
|
268.6
|
1.0
|
|
C
|
B:CYS1166
|
4.8
|
308.3
|
1.0
|
|
CA
|
B:ILE1165
|
4.8
|
268.6
|
1.0
|
|
HA
|
B:CYS1163
|
4.9
|
300.3
|
1.0
|
|
N
|
B:GLY1167
|
4.9
|
292.7
|
1.0
|
|
ND2
|
B:ASN1187
|
4.9
|
299.4
|
1.0
|
|
OG
|
B:SER1184
|
4.9
|
308.0
|
1.0
|
|
HG
|
B:SER1184
|
5.0
|
308.0
|
1.0
|
|
H
|
B:CYS1163
|
5.0
|
300.3
|
1.0
|
|
CG2
|
B:ILE1165
|
5.0
|
268.6
|
1.0
|
|
O
|
B:CYS1182
|
5.0
|
338.7
|
1.0
|
|
Zinc binding site 4 out
of 10 in 7wbw
Go back to
Zinc Binding Sites List in 7wbw
Zinc binding site 4 out
of 10 in the Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn401
b:236.5
occ:1.00
|
HG
|
C:CYS87
|
1.4
|
235.9
|
1.0
|
|
SG
|
C:CYS91
|
2.3
|
172.7
|
1.0
|
|
SG
|
C:CYS87
|
2.3
|
235.9
|
1.0
|
|
SG
|
C:CYS85
|
2.3
|
261.8
|
1.0
|
|
SG
|
C:CYS94
|
2.3
|
215.0
|
1.0
|
|
HG
|
C:CYS85
|
2.6
|
261.8
|
1.0
|
|
H
|
C:CYS91
|
2.6
|
172.7
|
1.0
|
|
HB3
|
C:CYS94
|
2.6
|
215.0
|
1.0
|
|
HG
|
C:CYS91
|
2.9
|
172.7
|
1.0
|
|
HB3
|
C:CYS85
|
2.9
|
261.8
|
1.0
|
|
CB
|
C:CYS94
|
3.0
|
215.0
|
1.0
|
|
HB3
|
C:CYS91
|
3.1
|
172.7
|
1.0
|
|
N
|
C:CYS91
|
3.1
|
172.7
|
1.0
|
|
CB
|
C:CYS91
|
3.1
|
172.7
|
1.0
|
|
CB
|
C:CYS85
|
3.1
|
261.8
|
1.0
|
|
HZ2
|
W:LYS764
|
3.4
|
371.1
|
1.0
|
|
HB3
|
C:CYS87
|
3.4
|
235.9
|
1.0
|
|
HG
|
C:CYS94
|
3.5
|
215.0
|
1.0
|
|
HB2
|
C:CYS85
|
3.5
|
261.8
|
1.0
|
|
CB
|
C:CYS87
|
3.5
|
235.9
|
1.0
|
|
HZ2
|
C:LYS80
|
3.6
|
210.3
|
1.0
|
|
CA
|
C:CYS91
|
3.6
|
172.7
|
1.0
|
|
HB2
|
C:CYS94
|
3.7
|
215.0
|
1.0
|
|
H
|
C:CYS94
|
3.8
|
215.0
|
1.0
|
|
HA
|
C:TYR90
|
3.8
|
189.1
|
1.0
|
|
H
|
C:CYS87
|
3.8
|
235.9
|
1.0
|
|
C
|
C:TYR90
|
3.9
|
189.1
|
1.0
|
|
N
|
C:CYS94
|
4.0
|
215.0
|
1.0
|
|
HB2
|
C:CYS91
|
4.0
|
172.7
|
1.0
|
|
HB2
|
C:CYS87
|
4.1
|
235.9
|
1.0
|
|
CA
|
C:CYS94
|
4.1
|
215.0
|
1.0
|
|
O
|
C:CYS91
|
4.1
|
172.7
|
1.0
|
|
C
|
C:CYS91
|
4.1
|
172.7
|
1.0
|
|
NZ
|
W:LYS764
|
4.2
|
371.1
|
1.0
|
|
HZ3
|
C:LYS80
|
4.2
|
210.3
|
1.0
|
|
HZ1
|
W:LYS764
|
4.3
|
371.1
|
1.0
|
|
HB2
|
C:GLU93
|
4.3
|
195.8
|
1.0
|
|
NZ
|
C:LYS80
|
4.3
|
210.3
|
1.0
|
|
H
|
C:GLU93
|
4.4
|
195.8
|
1.0
|
|
CA
|
C:TYR90
|
4.4
|
189.1
|
1.0
|
|
HA
|
C:CYS91
|
4.5
|
172.7
|
1.0
|
|
N
|
C:CYS87
|
4.5
|
235.9
|
1.0
|
|
CA
|
C:CYS85
|
4.5
|
261.8
|
1.0
|
|
HE2
|
W:LYS764
|
4.6
|
371.1
|
1.0
|
|
CA
|
C:CYS87
|
4.6
|
235.9
|
1.0
|
|
C
|
C:GLU93
|
4.7
|
195.8
|
1.0
|
|
O
|
C:ASP89
|
4.7
|
270.0
|
1.0
|
|
HZ3
|
W:LYS764
|
4.7
|
371.1
|
1.0
|
|
O
|
C:TYR90
|
4.7
|
189.1
|
1.0
|
|
HA
|
C:CYS94
|
4.8
|
215.0
|
1.0
|
|
HZ1
|
C:LYS80
|
4.8
|
210.3
|
1.0
|
|
HA
|
C:CYS85
|
4.8
|
261.8
|
1.0
|
|
C
|
C:CYS85
|
4.8
|
261.8
|
1.0
|
|
HB2
|
C:TYR90
|
4.9
|
189.1
|
1.0
|
|
N
|
C:GLU93
|
4.9
|
195.8
|
1.0
|
|
CE
|
W:LYS764
|
5.0
|
371.1
|
1.0
|
|
Zinc binding site 5 out
of 10 in 7wbw
Go back to
Zinc Binding Sites List in 7wbw
Zinc binding site 5 out
of 10 in the Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn201
b:652.1
occ:1.00
|
HB3
|
I:CYS103
|
1.4
|
486.1
|
1.0
|
|
HB3
|
I:CYS75
|
1.6
|
625.1
|
1.0
|
|
CB
|
I:CYS103
|
2.0
|
486.1
|
1.0
|
|
CB
|
I:CYS75
|
2.2
|
625.1
|
1.0
|
|
HB2
|
I:CYS103
|
2.3
|
486.1
|
1.0
|
|
SG
|
I:CYS78
|
2.3
|
648.7
|
1.0
|
|
SG
|
I:CYS103
|
2.3
|
486.1
|
1.0
|
|
SG
|
I:CYS75
|
2.3
|
625.1
|
1.0
|
|
HG
|
I:CYS78
|
2.6
|
648.7
|
1.0
|
|
HG
|
I:CYS103
|
2.8
|
486.1
|
1.0
|
|
HB2
|
I:CYS75
|
2.8
|
625.1
|
1.0
|
|
H
|
I:CYS78
|
3.4
|
648.7
|
1.0
|
|
CA
|
I:CYS103
|
3.4
|
486.1
|
1.0
|
|
CA
|
I:CYS75
|
3.4
|
625.1
|
1.0
|
|
HA
|
I:CYS75
|
3.4
|
625.1
|
1.0
|
|
HG
|
I:CYS75
|
3.5
|
625.1
|
1.0
|
|
H
|
I:CYS106
|
3.5
|
520.9
|
1.0
|
|
HA
|
I:CYS103
|
3.6
|
486.1
|
1.0
|
|
H
|
I:LEU104
|
3.7
|
508.7
|
1.0
|
|
H
|
I:ASN105
|
3.7
|
563.1
|
1.0
|
|
HB3
|
I:CYS106
|
3.8
|
520.9
|
1.0
|
|
HB2
|
I:SER80
|
3.9
|
599.4
|
1.0
|
|
CB
|
I:CYS78
|
3.9
|
648.7
|
1.0
|
|
H
|
I:SER80
|
3.9
|
599.4
|
1.0
|
|
SG
|
I:CYS106
|
4.0
|
520.9
|
1.0
|
|
HG
|
I:CYS106
|
4.0
|
520.9
|
1.0
|
|
N
|
I:LEU104
|
4.1
|
508.7
|
1.0
|
|
C
|
I:CYS103
|
4.1
|
486.1
|
1.0
|
|
N
|
I:CYS78
|
4.1
|
648.7
|
1.0
|
|
HB3
|
I:CYS78
|
4.2
|
648.7
|
1.0
|
|
H
|
I:HIS79
|
4.2
|
688.1
|
1.0
|
|
H
|
I:GLU77
|
4.2
|
661.5
|
1.0
|
|
C
|
I:CYS75
|
4.2
|
625.1
|
1.0
|
|
HD2
|
I:PRO76
|
4.3
|
577.9
|
1.0
|
|
CB
|
I:CYS106
|
4.4
|
520.9
|
1.0
|
|
N
|
I:CYS103
|
4.4
|
486.1
|
1.0
|
|
H
|
I:CYS103
|
4.4
|
486.1
|
1.0
|
|
N
|
I:CYS106
|
4.4
|
520.9
|
1.0
|
|
CA
|
I:CYS78
|
4.5
|
648.7
|
1.0
|
|
HB2
|
I:ASN105
|
4.5
|
563.1
|
1.0
|
|
N
|
I:CYS75
|
4.5
|
625.1
|
1.0
|
|
N
|
I:ASN105
|
4.6
|
563.1
|
1.0
|
|
HB2
|
I:CYS78
|
4.6
|
648.7
|
1.0
|
|
H
|
I:CYS75
|
4.6
|
625.1
|
1.0
|
|
N
|
I:HIS79
|
4.6
|
688.1
|
1.0
|
|
HB3
|
I:CYS83
|
4.7
|
450.8
|
1.0
|
|
HB2
|
I:GLU77
|
4.7
|
661.5
|
1.0
|
|
N
|
I:PRO76
|
4.7
|
577.9
|
1.0
|
|
N
|
I:SER80
|
4.8
|
599.4
|
1.0
|
|
CB
|
I:SER80
|
4.8
|
599.4
|
1.0
|
|
O
|
I:CYS75
|
4.8
|
625.1
|
1.0
|
|
C
|
I:CYS78
|
4.8
|
648.7
|
1.0
|
|
CD
|
I:PRO76
|
4.9
|
577.9
|
1.0
|
|
HB2
|
I:LEU104
|
4.9
|
508.7
|
1.0
|
|
HE1
|
I:PHE110
|
4.9
|
307.2
|
1.0
|
|
N
|
I:GLU77
|
5.0
|
661.5
|
1.0
|
|
Zinc binding site 6 out
of 10 in 7wbw
Go back to
Zinc Binding Sites List in 7wbw
Zinc binding site 6 out
of 10 in the Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn202
b:472.8
occ:1.00
|
HB3
|
I:CYS10
|
1.6
|
298.3
|
1.0
|
|
HG
|
I:CYS10
|
1.9
|
298.3
|
1.0
|
|
CB
|
I:CYS10
|
2.1
|
298.3
|
1.0
|
|
HB2
|
I:CYS10
|
2.3
|
298.3
|
1.0
|
|
SG
|
I:CYS10
|
2.3
|
298.3
|
1.0
|
|
SG
|
I:CYS32
|
2.3
|
319.9
|
1.0
|
|
SG
|
I:CYS29
|
2.3
|
293.3
|
1.0
|
|
HG
|
I:CYS32
|
2.5
|
319.9
|
1.0
|
|
HB3
|
I:CYS7
|
2.8
|
299.1
|
1.0
|
|
HB2
|
I:ASN12
|
3.0
|
270.0
|
1.0
|
|
HB3
|
I:CYS29
|
3.1
|
293.3
|
1.0
|
|
HG
|
I:CYS29
|
3.1
|
293.3
|
1.0
|
|
HB3
|
I:CYS32
|
3.1
|
319.9
|
1.0
|
|
CB
|
I:CYS29
|
3.2
|
293.3
|
1.0
|
|
HB2
|
I:CYS29
|
3.2
|
293.3
|
1.0
|
|
HB2
|
I:CYS7
|
3.2
|
299.1
|
1.0
|
|
CB
|
I:CYS7
|
3.3
|
299.1
|
1.0
|
|
CB
|
I:CYS32
|
3.3
|
319.9
|
1.0
|
|
H
|
I:ASN12
|
3.4
|
270.0
|
1.0
|
|
H
|
I:CYS32
|
3.4
|
319.9
|
1.0
|
|
SG
|
I:CYS7
|
3.5
|
299.1
|
1.0
|
|
CA
|
I:CYS10
|
3.5
|
298.3
|
1.0
|
|
HD21
|
I:ASN12
|
3.8
|
270.0
|
1.0
|
|
N
|
I:CYS32
|
3.8
|
319.9
|
1.0
|
|
H
|
I:CYS10
|
3.8
|
298.3
|
1.0
|
|
CB
|
I:ASN12
|
4.0
|
270.0
|
1.0
|
|
C
|
I:CYS10
|
4.0
|
298.3
|
1.0
|
|
HB3
|
I:ASN31
|
4.0
|
270.1
|
1.0
|
|
HA
|
I:CYS10
|
4.1
|
298.3
|
1.0
|
|
HB2
|
I:CYS32
|
4.1
|
319.9
|
1.0
|
|
CA
|
I:CYS32
|
4.1
|
319.9
|
1.0
|
|
N
|
I:ASN12
|
4.2
|
270.0
|
1.0
|
|
N
|
I:CYS10
|
4.2
|
298.3
|
1.0
|
|
H
|
I:ARG30
|
4.4
|
240.7
|
1.0
|
|
O
|
I:ASN12
|
4.4
|
270.0
|
1.0
|
|
H
|
I:ASN31
|
4.4
|
270.1
|
1.0
|
|
HG
|
I:CYS7
|
4.4
|
299.1
|
1.0
|
|
HB3
|
I:ASN12
|
4.4
|
270.0
|
1.0
|
|
H
|
I:ASN11
|
4.4
|
253.4
|
1.0
|
|
N
|
I:ASN11
|
4.4
|
253.4
|
1.0
|
|
CA
|
I:ASN12
|
4.5
|
270.0
|
1.0
|
|
ND2
|
I:ASN12
|
4.5
|
270.0
|
1.0
|
|
O
|
I:CYS10
|
4.5
|
298.3
|
1.0
|
|
C
|
I:ASN31
|
4.6
|
270.1
|
1.0
|
|
CA
|
I:CYS29
|
4.6
|
293.3
|
1.0
|
|
HB3
|
I:TYR34
|
4.7
|
320.8
|
1.0
|
|
C
|
I:ASN12
|
4.7
|
270.0
|
1.0
|
|
H
|
I:CYS7
|
4.7
|
299.1
|
1.0
|
|
CA
|
I:CYS7
|
4.7
|
299.1
|
1.0
|
|
N
|
I:ASN31
|
4.8
|
270.1
|
1.0
|
|
CG
|
I:ASN12
|
4.8
|
270.0
|
1.0
|
|
C
|
I:CYS32
|
4.9
|
319.9
|
1.0
|
|
N
|
I:ARG30
|
4.9
|
240.7
|
1.0
|
|
CB
|
I:ASN31
|
4.9
|
270.1
|
1.0
|
|
HD22
|
I:LEU14
|
4.9
|
281.9
|
1.0
|
|
HA
|
I:CYS32
|
4.9
|
319.9
|
1.0
|
|
HA
|
I:CYS29
|
4.9
|
293.3
|
1.0
|
|
CA
|
I:ASN31
|
5.0
|
270.1
|
1.0
|
|
Zinc binding site 7 out
of 10 in 7wbw
Go back to
Zinc Binding Sites List in 7wbw
Zinc binding site 7 out
of 10 in the Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn101
b:184.6
occ:1.00
|
SG
|
J:CYS45
|
2.3
|
217.9
|
1.0
|
|
SG
|
J:CYS7
|
2.3
|
280.4
|
1.0
|
|
SG
|
J:CYS10
|
2.3
|
357.2
|
1.0
|
|
SG
|
J:CYS44
|
2.3
|
279.6
|
1.0
|
|
HG
|
J:CYS44
|
2.6
|
279.6
|
1.0
|
|
HE
|
J:ARG42
|
2.8
|
256.3
|
1.0
|
|
NH2
|
J:ARG42
|
2.8
|
256.3
|
1.0
|
|
HB3
|
J:CYS7
|
3.0
|
280.4
|
1.0
|
|
CB
|
J:CYS7
|
3.1
|
280.4
|
1.0
|
|
H
|
J:CYS10
|
3.2
|
357.2
|
1.0
|
|
N
|
J:CYS45
|
3.2
|
217.9
|
1.0
|
|
H
|
J:CYS45
|
3.2
|
217.9
|
1.0
|
|
HB2
|
J:CYS7
|
3.3
|
280.4
|
1.0
|
|
HG
|
J:CYS45
|
3.3
|
217.9
|
1.0
|
|
HG
|
J:CYS7
|
3.3
|
280.4
|
1.0
|
|
HG
|
J:CYS10
|
3.3
|
357.2
|
1.0
|
|
HA
|
J:CYS45
|
3.3
|
217.9
|
1.0
|
|
HH22
|
J:ARG42
|
3.4
|
256.3
|
1.0
|
|
HB3
|
J:CYS10
|
3.4
|
357.2
|
1.0
|
|
NE
|
J:ARG42
|
3.5
|
256.3
|
1.0
|
|
CB
|
J:CYS10
|
3.5
|
357.2
|
1.0
|
|
CB
|
J:CYS45
|
3.5
|
217.9
|
1.0
|
|
CA
|
J:CYS45
|
3.5
|
217.9
|
1.0
|
|
CZ
|
J:ARG42
|
3.6
|
256.3
|
1.0
|
|
HB2
|
J:SER9
|
3.6
|
387.8
|
1.0
|
|
C
|
J:CYS44
|
3.6
|
279.6
|
1.0
|
|
CB
|
J:CYS44
|
3.7
|
279.6
|
1.0
|
|
HB3
|
J:LYS12
|
3.8
|
250.6
|
1.0
|
|
HB2
|
J:CYS44
|
3.8
|
279.6
|
1.0
|
|
HB2
|
J:ARG42
|
3.9
|
256.3
|
1.0
|
|
N
|
J:CYS10
|
3.9
|
357.2
|
1.0
|
|
H
|
J:LYS12
|
4.0
|
250.6
|
1.0
|
|
O
|
J:CYS44
|
4.0
|
279.6
|
1.0
|
|
HB2
|
J:CYS45
|
4.1
|
217.9
|
1.0
|
|
HB3
|
J:CYS45
|
4.2
|
217.9
|
1.0
|
|
H
|
J:GLY11
|
4.2
|
322.9
|
1.0
|
|
HB2
|
J:CYS10
|
4.3
|
357.2
|
1.0
|
|
CA
|
J:CYS44
|
4.3
|
279.6
|
1.0
|
|
HB2
|
J:LYS12
|
4.3
|
250.6
|
1.0
|
|
CA
|
J:CYS10
|
4.3
|
357.2
|
1.0
|
|
HE1
|
J:MET48
|
4.3
|
251.6
|
1.0
|
|
HB3
|
J:ARG42
|
4.4
|
256.3
|
1.0
|
|
HB3
|
J:CYS44
|
4.5
|
279.6
|
1.0
|
|
CB
|
J:LYS12
|
4.5
|
250.6
|
1.0
|
|
CB
|
J:SER9
|
4.5
|
387.8
|
1.0
|
|
CA
|
J:CYS7
|
4.6
|
280.4
|
1.0
|
|
CB
|
J:ARG42
|
4.6
|
256.3
|
1.0
|
|
HH21
|
J:ARG47
|
4.6
|
272.9
|
1.0
|
|
N
|
J:GLY11
|
4.8
|
322.9
|
1.0
|
|
H
|
J:SER9
|
4.8
|
387.8
|
1.0
|
|
CD
|
J:ARG42
|
4.8
|
256.3
|
1.0
|
|
NH1
|
J:ARG42
|
4.8
|
256.3
|
1.0
|
|
N
|
J:LYS12
|
4.8
|
250.6
|
1.0
|
|
HB3
|
J:SER9
|
4.8
|
387.8
|
1.0
|
|
O
|
J:CYS7
|
4.9
|
280.4
|
1.0
|
|
O
|
J:ARG42
|
4.9
|
256.3
|
1.0
|
|
HD3
|
J:LYS12
|
4.9
|
250.6
|
1.0
|
|
HD2
|
J:ARG42
|
4.9
|
256.3
|
1.0
|
|
C
|
J:CYS7
|
4.9
|
280.4
|
1.0
|
|
HA
|
J:CYS7
|
5.0
|
280.4
|
1.0
|
|
C
|
J:SER9
|
5.0
|
387.8
|
1.0
|
|
C
|
J:CYS10
|
5.0
|
357.2
|
1.0
|
|
Zinc binding site 8 out
of 10 in 7wbw
Go back to
Zinc Binding Sites List in 7wbw
Zinc binding site 8 out
of 10 in the Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Zn101
b:164.3
occ:1.00
|
HG
|
L:CYS33
|
1.3
|
114.1
|
1.0
|
|
SG
|
L:CYS53
|
2.3
|
105.5
|
1.0
|
|
SG
|
L:CYS33
|
2.3
|
114.1
|
1.0
|
|
SG
|
L:CYS50
|
2.3
|
128.9
|
1.0
|
|
SG
|
L:CYS36
|
2.3
|
118.7
|
1.0
|
|
HG
|
L:CYS50
|
2.4
|
128.9
|
1.0
|
|
HG
|
L:CYS53
|
2.7
|
105.5
|
1.0
|
|
H
|
L:CYS36
|
2.8
|
118.7
|
1.0
|
|
HB2
|
L:CYS33
|
2.8
|
114.1
|
1.0
|
|
CB
|
L:CYS33
|
2.9
|
114.1
|
1.0
|
|
HB3
|
L:CYS33
|
2.9
|
114.1
|
1.0
|
|
HG2
|
L:GLU52
|
3.0
|
121.5
|
1.0
|
|
HB3
|
L:CYS36
|
3.0
|
118.7
|
1.0
|
|
H
|
L:CYS53
|
3.2
|
105.5
|
1.0
|
|
CB
|
L:CYS36
|
3.2
|
118.7
|
1.0
|
|
HB3
|
L:CYS53
|
3.3
|
105.5
|
1.0
|
|
HG
|
L:CYS36
|
3.3
|
118.7
|
1.0
|
|
CB
|
L:CYS53
|
3.4
|
105.5
|
1.0
|
|
HB3
|
L:HIS55
|
3.5
|
133.7
|
1.0
|
|
HB2
|
L:CYS50
|
3.6
|
128.9
|
1.0
|
|
N
|
L:CYS36
|
3.6
|
118.7
|
1.0
|
|
CB
|
L:CYS50
|
3.6
|
128.9
|
1.0
|
|
N
|
L:CYS53
|
3.7
|
105.5
|
1.0
|
|
H
|
L:HIS55
|
3.7
|
133.7
|
1.0
|
|
HB2
|
L:HIS55
|
3.8
|
133.7
|
1.0
|
|
CG
|
L:GLU52
|
3.8
|
121.5
|
1.0
|
|
OE2
|
L:GLU52
|
3.8
|
121.5
|
1.0
|
|
HB2
|
L:ALA35
|
3.8
|
136.9
|
1.0
|
|
HB3
|
L:CYS50
|
4.0
|
128.9
|
1.0
|
|
H
|
L:ALA35
|
4.0
|
136.9
|
1.0
|
|
CA
|
L:CYS36
|
4.0
|
118.7
|
1.0
|
|
CA
|
L:CYS53
|
4.0
|
105.5
|
1.0
|
|
HG3
|
L:GLU52
|
4.0
|
121.5
|
1.0
|
|
HB2
|
L:CYS36
|
4.0
|
118.7
|
1.0
|
|
CD
|
L:GLU52
|
4.1
|
121.5
|
1.0
|
|
CB
|
L:HIS55
|
4.1
|
133.7
|
1.0
|
|
HB2
|
L:CYS53
|
4.2
|
105.5
|
1.0
|
|
H
|
L:ALA37
|
4.3
|
129.3
|
1.0
|
|
H
|
L:GLU52
|
4.4
|
121.5
|
1.0
|
|
C
|
L:CYS53
|
4.4
|
105.5
|
1.0
|
|
CA
|
L:CYS33
|
4.4
|
114.1
|
1.0
|
|
N
|
L:HIS55
|
4.5
|
133.7
|
1.0
|
|
HB3
|
L:HIS38
|
4.7
|
93.4
|
1.0
|
|
H
|
L:GLY54
|
4.7
|
99.7
|
1.0
|
|
HA
|
L:CYS33
|
4.7
|
114.1
|
1.0
|
|
HE2
|
L:PHE40
|
4.7
|
80.9
|
1.0
|
|
C
|
L:GLU52
|
4.7
|
121.5
|
1.0
|
|
C
|
L:ALA35
|
4.7
|
136.9
|
1.0
|
|
N
|
L:ALA35
|
4.7
|
136.9
|
1.0
|
|
CB
|
L:ALA35
|
4.7
|
136.9
|
1.0
|
|
N
|
L:GLY54
|
4.7
|
99.7
|
1.0
|
|
H
|
L:HIS38
|
4.7
|
93.4
|
1.0
|
|
C
|
L:CYS36
|
4.8
|
118.7
|
1.0
|
|
N
|
L:ALA37
|
4.8
|
129.3
|
1.0
|
|
HA
|
L:CYS36
|
4.8
|
118.7
|
1.0
|
|
H
|
L:GLY34
|
4.8
|
128.0
|
1.0
|
|
CA
|
L:CYS50
|
4.9
|
128.9
|
1.0
|
|
HA
|
L:CYS53
|
4.9
|
105.5
|
1.0
|
|
O
|
L:CYS53
|
4.9
|
105.5
|
1.0
|
|
HA
|
L:CYS50
|
4.9
|
128.9
|
1.0
|
|
CA
|
L:HIS55
|
4.9
|
133.7
|
1.0
|
|
CA
|
L:ALA35
|
5.0
|
136.9
|
1.0
|
|
CB
|
L:GLU52
|
5.0
|
121.5
|
1.0
|
|
Zinc binding site 9 out
of 10 in 7wbw
Go back to
Zinc Binding Sites List in 7wbw
Zinc binding site 9 out
of 10 in the Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Zn201
b:703.8
occ:1.00
|
SG
|
M:CYS25
|
2.3
|
912.9
|
1.0
|
|
SG
|
M:CYS52
|
2.3
|
822.7
|
1.0
|
|
SG
|
M:CYS28
|
2.3
|
813.1
|
1.0
|
|
SG
|
M:CYS49
|
2.3
|
873.3
|
1.0
|
|
HG
|
M:CYS49
|
2.7
|
873.3
|
1.0
|
|
HG
|
M:CYS25
|
2.7
|
912.9
|
1.0
|
|
H
|
M:CYS52
|
2.8
|
822.7
|
1.0
|
|
HG
|
M:CYS28
|
2.9
|
813.1
|
1.0
|
|
HG
|
M:CYS52
|
3.1
|
822.7
|
1.0
|
|
H
|
M:CYS28
|
3.2
|
813.1
|
1.0
|
|
HG
|
M:SER33
|
3.4
|
975.7
|
1.0
|
|
HD21
|
M:LEU54
|
3.4
|
883.3
|
1.0
|
|
CB
|
M:CYS52
|
3.5
|
822.7
|
1.0
|
|
HB3
|
M:CYS52
|
3.5
|
822.7
|
1.0
|
|
N
|
M:CYS52
|
3.5
|
822.7
|
1.0
|
|
HB2
|
M:LYS51
|
3.5
|
832.5
|
1.0
|
|
HB3
|
M:CYS28
|
3.6
|
813.1
|
1.0
|
|
CB
|
M:CYS28
|
3.6
|
813.1
|
1.0
|
|
CB
|
M:CYS49
|
3.7
|
873.3
|
1.0
|
|
HG
|
M:LEU54
|
3.7
|
883.3
|
1.0
|
|
CB
|
M:CYS25
|
3.7
|
912.9
|
1.0
|
|
HB2
|
M:CYS49
|
3.8
|
873.3
|
1.0
|
|
HB3
|
M:CYS49
|
3.8
|
873.3
|
1.0
|
|
HB3
|
M:CYS25
|
3.8
|
912.9
|
1.0
|
|
HB2
|
M:SER33
|
3.9
|
975.7
|
1.0
|
|
OG
|
M:SER33
|
3.9
|
975.7
|
1.0
|
|
HB2
|
M:CYS25
|
3.9
|
912.9
|
1.0
|
|
HB3
|
M:LYS51
|
4.0
|
832.5
|
1.0
|
|
HB3
|
M:PHE27
|
4.0
|
781.6
|
1.0
|
|
N
|
M:CYS28
|
4.0
|
813.1
|
1.0
|
|
HD23
|
M:LEU54
|
4.0
|
883.3
|
1.0
|
|
CD2
|
M:LEU54
|
4.1
|
883.3
|
1.0
|
|
CA
|
M:CYS52
|
4.1
|
822.7
|
1.0
|
|
H
|
M:LYS51
|
4.1
|
832.5
|
1.0
|
|
CB
|
M:LYS51
|
4.2
|
832.5
|
1.0
|
|
HB2
|
M:CYS52
|
4.3
|
822.7
|
1.0
|
|
HD2
|
M:PHE27
|
4.4
|
781.6
|
1.0
|
|
CA
|
M:CYS28
|
4.4
|
813.1
|
1.0
|
|
H
|
M:ASN53
|
4.4
|
865.3
|
1.0
|
|
CG
|
M:LEU54
|
4.4
|
883.3
|
1.0
|
|
CB
|
M:SER33
|
4.4
|
975.7
|
1.0
|
|
HB2
|
M:CYS28
|
4.4
|
813.1
|
1.0
|
|
H
|
M:LEU54
|
4.4
|
883.3
|
1.0
|
|
H
|
M:HIS30
|
4.5
|
903.3
|
1.0
|
|
HB2
|
M:HIS30
|
4.5
|
903.3
|
1.0
|
|
C
|
M:LYS51
|
4.5
|
832.5
|
1.0
|
|
HD1
|
M:HIS30
|
4.6
|
903.3
|
1.0
|
|
H
|
M:ASN29
|
4.7
|
771.9
|
1.0
|
|
H
|
M:PHE27
|
4.7
|
781.6
|
1.0
|
|
CA
|
M:LYS51
|
4.7
|
832.5
|
1.0
|
|
C
|
M:CYS52
|
4.7
|
822.7
|
1.0
|
|
N
|
M:ASN53
|
4.8
|
865.3
|
1.0
|
|
N
|
M:LYS51
|
4.8
|
832.5
|
1.0
|
|
HB3
|
M:SER33
|
4.9
|
975.7
|
1.0
|
|
HA
|
M:CYS52
|
4.9
|
822.7
|
1.0
|
|
CB
|
M:PHE27
|
4.9
|
781.6
|
1.0
|
|
HD22
|
M:LEU54
|
4.9
|
883.3
|
1.0
|
|
C
|
M:CYS28
|
4.9
|
813.1
|
1.0
|
|
HE2
|
M:LYS51
|
5.0
|
832.5
|
1.0
|
|
Zinc binding site 10 out
of 10 in 7wbw
Go back to
Zinc Binding Sites List in 7wbw
Zinc binding site 10 out
of 10 in the Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of Rna Polymerase II Elongation Complex Bound with ELF1 and SPT4/5, Stalled at Shl(-3.5) of the Nucleosome within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
V:Zn300
b:932.0
occ:1.00
|
SG
|
V:CYS15
|
2.3
|
728.6
|
1.0
|
|
SG
|
V:CYS32
|
2.3
|
811.2
|
1.0
|
|
SG
|
V:CYS12
|
2.3
|
788.3
|
1.0
|
|
SG
|
V:CYS29
|
2.3
|
851.5
|
1.0
|
|
HG
|
V:CYS15
|
2.5
|
728.6
|
1.0
|
|
HB2
|
V:CYS32
|
2.5
|
811.2
|
1.0
|
|
HG
|
V:CYS29
|
2.7
|
851.5
|
1.0
|
|
H
|
V:CYS15
|
2.9
|
728.6
|
1.0
|
|
CB
|
V:CYS32
|
2.9
|
811.2
|
1.0
|
|
HG
|
V:CYS12
|
3.1
|
788.3
|
1.0
|
|
HB3
|
V:CYS15
|
3.1
|
728.6
|
1.0
|
|
HB3
|
V:CYS12
|
3.3
|
788.3
|
1.0
|
|
CB
|
V:CYS15
|
3.3
|
728.6
|
1.0
|
|
CB
|
V:CYS12
|
3.3
|
788.3
|
1.0
|
|
H
|
V:CYS32
|
3.4
|
811.2
|
1.0
|
|
HG23
|
V:ILE17
|
3.5
|
848.0
|
1.0
|
|
HB2
|
V:CYS12
|
3.5
|
788.3
|
1.0
|
|
HG
|
V:CYS32
|
3.5
|
811.2
|
1.0
|
|
HB3
|
V:CYS32
|
3.6
|
811.2
|
1.0
|
|
N
|
V:CYS15
|
3.7
|
728.6
|
1.0
|
|
H
|
V:GLY16
|
3.8
|
773.7
|
1.0
|
|
HG21
|
V:ILE17
|
3.9
|
848.0
|
1.0
|
|
HB3
|
V:LEU14
|
3.9
|
646.1
|
1.0
|
|
N
|
V:CYS32
|
3.9
|
811.2
|
1.0
|
|
CB
|
V:CYS29
|
4.0
|
851.5
|
1.0
|
|
HD11
|
V:LEU36
|
4.0
|
797.2
|
1.0
|
|
CA
|
V:CYS15
|
4.0
|
728.6
|
1.0
|
|
CA
|
V:CYS32
|
4.1
|
811.2
|
1.0
|
|
HB2
|
V:CYS15
|
4.1
|
728.6
|
1.0
|
|
CG2
|
V:ILE17
|
4.1
|
848.0
|
1.0
|
|
H
|
V:ILE17
|
4.2
|
848.0
|
1.0
|
|
HB2
|
V:CYS29
|
4.2
|
851.5
|
1.0
|
|
HB3
|
V:CYS29
|
4.2
|
851.5
|
1.0
|
|
HB2
|
V:ASN31
|
4.3
|
769.2
|
1.0
|
|
H
|
V:LEU14
|
4.4
|
646.1
|
1.0
|
|
N
|
V:GLY16
|
4.4
|
773.7
|
1.0
|
|
H
|
V:ASN31
|
4.5
|
769.2
|
1.0
|
|
HA
|
V:CYS32
|
4.6
|
811.2
|
1.0
|
|
C
|
V:CYS15
|
4.7
|
728.6
|
1.0
|
|
HG22
|
V:ILE17
|
4.7
|
848.0
|
1.0
|
|
CA
|
V:CYS12
|
4.8
|
788.3
|
1.0
|
|
N
|
V:ILE17
|
4.8
|
848.0
|
1.0
|
|
C
|
V:LEU14
|
4.8
|
646.1
|
1.0
|
|
CB
|
V:LEU14
|
4.8
|
646.1
|
1.0
|
|
HA
|
V:CYS15
|
4.9
|
728.6
|
1.0
|
|
HD12
|
V:LEU38
|
4.9
|
854.8
|
1.0
|
|
N
|
V:LEU14
|
4.9
|
646.1
|
1.0
|
|
CD1
|
V:LEU36
|
4.9
|
797.2
|
1.0
|
|
Reference:
K.Osumi,
T.Kujirai,
H.Ehara,
M.Ogasawara,
C.Kinoshita,
M.Saotome,
W.Kagawa,
S.I.Sekine,
Y.Takizawa,
H.Kurumizaka.
Structural Basis of Damaged Nucleotide Recognition By Transcribing Rna Polymerase II in the Nucleosome. J.Mol.Biol. V. 435 68130 2023.
ISSN: ESSN 1089-8638
PubMed: 37120012
DOI: 10.1016/J.JMB.2023.168130
Page generated: Wed Oct 30 14:20:54 2024
|
