Zinc in PDB 7w6y: Crystal Structure of Kangiella Koreensis Rsep Orthologue in Complex with Batimastat in Space Group P1

The structure of Crystal Structure of Kangiella Koreensis Rsep Orthologue in Complex with Batimastat in Space Group P1, PDB code: 7w6y was solved by Y.Imaizumi, K.Takanuki, T.Nogi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.91 / 3.10
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	44.56, 49.78, 76.08, 86.9, 79.18, 82.19
R / Rfree (%)	25.6 / 29.9

The binding sites of Zinc atom in the Crystal Structure of Kangiella Koreensis Rsep Orthologue in Complex with Batimastat in Space Group P1 (pdb code 7w6y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Kangiella Koreensis Rsep Orthologue in Complex with Batimastat in Space Group P1, PDB code: 7w6y:

Zinc binding site 1 out of 1 in the Crystal Structure of Kangiella Koreensis Rsep Orthologue in Complex with Batimastat in Space Group P1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Kangiella Koreensis Rsep Orthologue in Complex with Batimastat in Space Group P1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:64.5 occ:1.00 O1 A:BAT502 2.0 63.7 1.0 O2 A:BAT502 2.0 72.7 1.0 NE2 A:HIS22 2.1 57.2 1.0 NE2 A:HIS26 2.1 66.4 1.0 OD2 A:ASP395 2.4 72.1 1.0 C2 A:BAT502 2.7 52.8 1.0 N1 A:BAT502 2.7 46.6 1.0 CD2 A:HIS26 2.8 63.4 1.0 OD1 A:ASP395 2.8 72.3 1.0 CG A:ASP395 3.0 70.5 1.0 CD2 A:HIS22 3.0 62.8 1.0 CE1 A:HIS22 3.1 62.0 1.0 CE1 A:HIS26 3.2 64.5 1.0 CG A:HIS26 4.0 63.1 1.0 C1 A:BAT502 4.1 66.6 1.0 ND1 A:HIS26 4.1 62.9 1.0 ND1 A:HIS22 4.2 62.9 1.0 CG A:HIS22 4.2 64.7 1.0 CB A:ASP395 4.5 63.9 1.0 C8 A:BAT502 4.6 68.2 1.0 CA A:GLY104 4.6 70.5 1.0 C9 A:BAT502 4.7 77.0 1.0 C3 A:BAT502 4.8 68.0 1.0 CD A:PRO105 4.9 73.3 1.0 OE2 A:GLU23 5.0 52.2 1.0 OE1 A:GLU23 5.0 59.0 1.0

Y.Imaizumi, K.Takanuki, T.Miyake, M.Takemoto, K.Hirata, M.Hirose, R.Oi, T.Kobayashi, K.Miyoshi, R.Aruga, T.Yokoyama, S.Katagiri, H.Matsuura, K.Iwasaki, T.Kato, M.K.Kaneko, Y.Kato, M.Tajiri, S.Akashi, O.Nureki, Y.Hizukuri, Y.Akiyama, T.Nogi. Mechanistic Insights Into Intramembrane Proteolysis By E. Coli Site-2 Protease Homolog Rsep. Sci Adv V. 8 P9011 2022.
ISSN: ESSN 2375-2548
PubMed: 36001659
DOI: 10.1126/SCIADV.ABP9011