Zinc in PDB 7w6u: Structure of Sars-Cov-2 Spike Receptor-Binding Domain Complexed with Its Receptor Equine ACE2

Enzymatic activity of Structure of Sars-Cov-2 Spike Receptor-Binding Domain Complexed with Its Receptor Equine ACE2

All present enzymatic activity of Structure of Sars-Cov-2 Spike Receptor-Binding Domain Complexed with Its Receptor Equine ACE2:
3.4.17.23;

Protein crystallography data

The structure of Structure of Sars-Cov-2 Spike Receptor-Binding Domain Complexed with Its Receptor Equine ACE2, PDB code: 7w6u was solved by Z.P.Xu, K.F.Liu, P.Han, J.X.Qi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.21 / 2.56
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 195.57, 195.57, 149.77, 90, 90, 90
R / Rfree (%) 19.3 / 22.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Sars-Cov-2 Spike Receptor-Binding Domain Complexed with Its Receptor Equine ACE2 (pdb code 7w6u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Sars-Cov-2 Spike Receptor-Binding Domain Complexed with Its Receptor Equine ACE2, PDB code: 7w6u:

Zinc binding site 1 out of 1 in 7w6u

Go back to Zinc Binding Sites List in 7w6u
Zinc binding site 1 out of 1 in the Structure of Sars-Cov-2 Spike Receptor-Binding Domain Complexed with Its Receptor Equine ACE2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Sars-Cov-2 Spike Receptor-Binding Domain Complexed with Its Receptor Equine ACE2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:125.8
occ:1.00
 OE2 A:GLU402 2.1 85.0 1.0
NE2 A:HIS374 2.1 64.8 1.0
NE2 A:HIS378 2.1 61.0 1.0
O A:HOH807 2.7 68.4 1.0
CD2 A:HIS374 2.9 58.9 1.0
CD A:GLU402 2.9 78.2 1.0
CD2 A:HIS378 3.0 53.9 1.0
CE1 A:HIS378 3.2 53.4 1.0
CE1 A:HIS374 3.2 64.0 1.0
OE1 A:GLU402 3.4 82.8 1.0
OE2 A:GLU375 3.7 60.3 1.0
CG A:GLU402 4.0 70.1 1.0
CG A:HIS374 4.1 59.5 1.0
CG A:HIS378 4.2 52.6 1.0
ND1 A:HIS378 4.2 51.6 1.0
ND1 A:HIS374 4.2 66.1 1.0
CD A:GLU375 4.6 55.8 1.0
O A:HOH835 4.7 57.1 1.0
OE1 A:GLU375 4.8 58.6 1.0
CA A:GLU402 4.9 54.6 1.0
CB A:GLU402 5.0 64.5 1.0

Reference:

Z.Xu, X.Kang, P.Han, P.Du, L.Li, A.Zheng, C.Deng, J.Qi, X.Zhao, Q.Wang, K.Liu, G.F.Gao. Binding and Structural Basis of Equine ACE2 to Rbds From Sars-Cov, Sars-Cov-2 and Related Coronaviruses Nat Commun V. 13 3547 2022.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-022-31276-6
Page generated: Sat Apr 8 05:11:50 2023

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