Zinc in PDB 7w6j: The Crystal Structure of MLL1 (N3861I/Q3867L/C3882SS)-RBBP5-ASH2L in Complex with H3K4ME2 Peptide

The structure of The Crystal Structure of MLL1 (N3861I/Q3867L/C3882SS)-RBBP5-ASH2L in Complex with H3K4ME2 Peptide, PDB code: 7w6j was solved by L.Zhao, Y.Li, Y.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.02 / 2.68
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	75.487, 44.297, 119.384, 90, 107.18, 90
R / Rfree (%)	20.4 / 25.2

The binding sites of Zinc atom in the The Crystal Structure of MLL1 (N3861I/Q3867L/C3882SS)-RBBP5-ASH2L in Complex with H3K4ME2 Peptide (pdb code 7w6j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of MLL1 (N3861I/Q3867L/C3882SS)-RBBP5-ASH2L in Complex with H3K4ME2 Peptide, PDB code: 7w6j:

Zinc binding site 1 out of 1 in the The Crystal Structure of MLL1 (N3861I/Q3867L/C3882SS)-RBBP5-ASH2L in Complex with H3K4ME2 Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of MLL1 (N3861I/Q3867L/C3882SS)-RBBP5-ASH2L in Complex with H3K4ME2 Peptide within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn4002 b:60.3 occ:1.00 SG C:CYS3958 2.3 51.3 1.0 SG C:CYS3910 2.3 53.3 1.0 SG C:CYS3965 2.3 58.9 1.0 SG C:CYS3960 2.3 55.1 1.0 CB C:CYS3965 3.2 59.6 1.0 CB C:CYS3958 3.4 57.7 1.0 CB C:CYS3910 3.5 54.2 1.0 CB C:CYS3960 3.5 51.1 1.0 CA C:CYS3965 3.7 62.4 1.0 N C:CYS3910 3.8 50.0 1.0 N C:CYS3960 4.0 54.0 1.0 N C:ARG3966 4.1 63.9 1.0 CA C:CYS3910 4.2 51.2 1.0 C C:CYS3965 4.2 63.3 1.0 CA C:CYS3960 4.3 53.9 1.0 N C:LYS3967 4.4 63.3 1.0 C C:CYS3958 4.6 60.1 1.0 CA C:CYS3958 4.6 58.4 1.0 CD2 C:HIS3908 4.7 46.7 1.0 NE2 C:HIS3908 4.8 47.2 1.0 N C:ASN3959 4.8 56.6 1.0 C C:SER3909 4.8 47.2 1.0 O C:CYS3958 4.9 61.2 1.0 N C:CYS3965 4.9 63.1 1.0

Y.Li, L.Zhao, Y.Zhang, P.Wu, Y.Xu, J.Mencius, Y.Zheng, X.Wang, W.Xu, N.Huang, X.Ye, M.Lei, P.Shi, C.Tian, C.Peng, G.Li, Z.Liu, S.Quan, Y.Chen. Structural Basis For Product Specificities of Mll Family Methyltransferases. Mol.Cell V. 82 3810 2022.
ISSN: ISSN 1097-2765
PubMed: 36108631
DOI: 10.1016/J.MOLCEL.2022.08.022