Zinc in PDB 7vwz: Cryo-Em Structure of Rob-Dependent Transcription Activation Complex in A Unique Conformation

All present enzymatic activity of Cryo-Em Structure of Rob-Dependent Transcription Activation Complex in A Unique Conformation:
2.7.7.6;

The structure of Cryo-Em Structure of Rob-Dependent Transcription Activation Complex in A Unique Conformation also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Cryo-Em Structure of Rob-Dependent Transcription Activation Complex in A Unique Conformation (pdb code 7vwz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Rob-Dependent Transcription Activation Complex in A Unique Conformation, PDB code: 7vwz:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Rob-Dependent Transcription Activation Complex in A Unique Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Rob-Dependent Transcription Activation Complex in A Unique Conformation within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1501 b:256.1 occ:1.00 N D:CYS72 2.2 222.0 1.0 SG D:CYS88 2.5 186.7 1.0 CB D:CYS72 2.6 222.0 1.0 SG D:CYS72 2.8 222.0 1.0 CA D:CYS72 2.8 222.0 1.0 CB D:CYS88 3.2 186.7 1.0 C D:LEU71 3.3 205.2 1.0 SG D:CYS85 3.5 207.0 1.0 N D:LEU71 3.5 205.2 1.0 CB D:LEU71 3.6 205.2 1.0 CA D:LEU71 3.6 205.2 1.0 C D:CYS72 3.8 222.0 1.0 N D:GLY73 3.8 212.0 1.0 SG D:CYS70 4.2 213.8 1.0 O D:LEU71 4.4 205.2 1.0 CB D:CYS85 4.4 207.0 1.0 CB D:CYS70 4.5 213.8 1.0 CA D:CYS88 4.5 186.7 1.0 C D:CYS70 4.5 213.8 1.0 CG D:LEU71 4.6 205.2 1.0 N D:CYS88 4.7 186.7 1.0 O D:CYS72 4.8 222.0 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Rob-Dependent Transcription Activation Complex in A Unique Conformation


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Rob-Dependent Transcription Activation Complex in A Unique Conformation within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn1502 b:97.9 occ:1.00 SG D:CYS898 2.5 102.3 1.0 SG D:CYS888 2.5 100.8 1.0 CB D:CYS888 2.6 100.8 1.0 SG D:CYS814 2.6 116.1 1.0 NH2 D:ARG883 2.7 111.0 1.0 CA D:CYS888 2.8 100.8 1.0 SG D:CYS895 3.3 101.7 1.0 CZ D:ARG883 3.6 111.0 1.0 CB D:CYS898 3.6 102.3 1.0 N D:CYS888 3.7 100.8 1.0 NE D:ARG883 3.8 111.0 1.0 CB D:CYS814 3.8 116.1 1.0 C D:CYS888 4.0 100.8 1.0 N D:ASP889 4.1 107.3 1.0 O D:SER887 4.1 110.2 1.0 N D:CYS814 4.2 116.1 1.0 C D:SER887 4.3 110.2 1.0 CB D:CYS895 4.3 101.7 1.0 OD1 D:ASP813 4.5 117.8 1.0 CA D:CYS814 4.6 116.1 1.0 OG1 D:THR816 4.7 118.6 1.0 NH1 D:ARG883 4.8 111.0 1.0 CA D:CYS898 4.9 102.3 1.0 N D:CYS898 4.9 102.3 1.0 N D:GLY815 5.0 120.7 1.0

J.Shi, F.Wang, F.Li, L.Wang, Y.Xiong, A.Wen, Y.Jin, S.Jin, F.Gao, Z.Feng, J.Li, Y.Zhang, Z.Shang, S.Wang, Y.Feng, W.Lin. Structural Basis of Transcription Activation By Rob, A Pleiotropic Arac/Xyls Family Regulator. Nucleic Acids Res. V. 50 5974 2022.
ISSN: ESSN 1362-4962
PubMed: 35641097
DOI: 10.1093/NAR/GKAC433