Zinc in PDB 7vmx: The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis

The structure of The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis, PDB code: 7vmx was solved by B.W.Zhan, J.X.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.86 / 2.80
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	128.114, 128.114, 200.671, 90, 90, 90
R / Rfree (%)	23.2 / 26.8

The structure of The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis (pdb code 7vmx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis, PDB code: 7vmx:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:97.3 occ:1.00 O A:HOH401 2.6 38.8 1.0 OD2 A:ASP114 3.7 69.1 1.0 CG A:ASP114 4.2 58.5 1.0 OD1 A:ASP114 4.5 58.3 1.0 NZ A:LYS115 4.8 51.2 1.0

Zinc binding site 2 out of 6 in the The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:55.9 occ:1.00 OE2 A:GLU145 2.1 53.7 1.0 ND1 A:HIS174 2.2 51.5 1.0 CE1 A:HIS174 2.9 60.3 1.0 CG A:HIS174 3.1 58.6 1.0 CD A:GLU145 3.1 56.2 1.0 CB A:HIS174 3.6 61.4 1.0 OE1 A:GLU145 3.6 59.6 1.0 NE2 A:HIS174 3.9 72.1 1.0 CD2 A:HIS174 4.0 56.9 1.0 CG A:GLU145 4.3 51.2 1.0 O A:ALA146 4.6 42.7 1.0 CA A:HIS174 4.8 63.6 1.0

Zinc binding site 3 out of 6 in the The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn502 b:91.3 occ:1.00 NE2 B:HIS322 2.3 70.5 1.0 CE1 B:HIS322 2.9 66.4 1.0 CD2 B:HIS322 3.5 64.5 1.0 ND1 B:HIS322 4.1 63.5 1.0 O B:LYS316 4.2 53.6 1.0 O B:GLY320 4.2 51.4 1.0 CG B:HIS322 4.4 54.1 1.0 CG B:LYS316 4.5 55.8 1.0 O B:GLY319 4.5 48.4 1.0 C B:GLY319 4.6 45.7 1.0 CA B:GLY319 4.8 43.2 1.0

Zinc binding site 4 out of 6 in the The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn503 b:95.0 occ:1.00 O B:HOH603 2.3 58.7 1.0 NE2 B:HIS78 2.3 91.6 1.0 CD2 B:HIS78 2.9 85.1 1.0 O B:HOH602 2.9 39.1 1.0 CE1 B:HIS78 3.6 81.9 1.0 CG B:GLN73 4.1 79.5 1.0 CG B:HIS78 4.2 77.4 1.0 O B:THR74 4.3 84.0 1.0 CB B:GLN73 4.4 83.6 1.0 ND1 B:HIS78 4.5 78.9 1.0 NE2 B:GLN73 4.7 83.3 1.0 CD B:GLN73 4.8 83.0 1.0

Zinc binding site 5 out of 6 in the The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn504 b:85.5 occ:1.00 CE1 B:HIS12 2.1 74.5 1.0 ND1 B:HIS78 2.3 78.9 1.0 NE2 B:HIS12 2.4 85.7 1.0 OE2 B:GLU71 2.6 66.7 1.0 ND1 B:HIS12 3.2 69.4 1.0 CE1 B:HIS78 3.2 81.9 1.0 CG B:HIS78 3.3 77.4 1.0 CD2 B:HIS12 3.5 75.3 1.0 CB B:HIS78 3.7 69.7 1.0 CD B:GLU71 3.8 78.5 1.0 CG B:HIS12 3.9 65.5 1.0 OE1 B:GLU71 4.2 76.6 1.0 NE2 B:HIS78 4.3 91.6 1.0 CD2 B:HIS78 4.4 85.1 1.0

Zinc binding site 6 out of 6 in the The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn505 b:102.6 occ:1.00 NZ A:LYS24 2.3 64.4 1.0 OD2 B:ASP144 2.5 79.5 1.0 OD2 B:ASP145 2.9 60.3 1.0 CE A:LYS24 3.0 68.6 1.0 OD1 B:ASP145 3.0 65.1 1.0 N A:MET1 3.1 62.2 1.0 CG B:ASP145 3.3 65.5 1.0 CG B:ASP144 3.6 81.5 1.0 OD1 B:ASP144 4.2 81.9 1.0 CD A:LYS24 4.2 67.7 1.0 CA A:MET1 4.4 78.2 1.0 CG A:MET1 4.8 68.8 1.0 CB B:ASP144 4.8 62.6 1.0 CB B:ASP145 4.8 63.0 1.0

B.W.Zhan, J.X.Li. The Crystal Structure of Ef-Tu and Ef-Ts Complex From Mycobacterium Tuberculosis To Be Published.