Zinc in PDB 7vlz: Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7

The structure of Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7, PDB code: 7vlz was solved by H.Y.Cao, Y.Wang, M.Peng, Y.Z.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.84 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	74.641, 50.573, 90.968, 90, 104.98, 90
R / Rfree (%)	16.6 / 18.7

The structure of Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7 also contains other interesting chemical elements:

Calcium

(Ca)

4 atoms

The binding sites of Zinc atom in the Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7 (pdb code 7vlz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7, PDB code: 7vlz:

Zinc binding site 1 out of 1 in the Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:11.8 occ:1.00 OE2 A:GLU505 1.9 10.4 1.0 NE2 A:HIS477 2.0 10.8 1.0 NE2 B:HIS13 2.0 10.9 1.0 NE2 A:HIS481 2.0 11.8 1.0 CD A:GLU505 2.7 11.9 1.0 OE1 A:GLU505 2.9 14.1 1.0 CE1 B:HIS13 3.0 17.4 1.0 CE1 A:HIS477 3.0 11.3 1.0 CD2 A:HIS477 3.0 11.2 1.0 CE1 A:HIS481 3.0 16.1 1.0 CD2 A:HIS481 3.0 11.3 1.0 CD2 B:HIS13 3.0 12.8 1.0 OH A:TYR549 3.8 19.5 1.0 ND1 B:HIS13 4.1 15.2 1.0 ND1 A:HIS477 4.1 11.6 1.0 O A:HOH1089 4.1 21.9 1.0 ND1 A:HIS481 4.1 13.4 1.0 CG A:HIS477 4.1 10.2 1.0 CG B:HIS13 4.1 13.9 1.0 CG A:HIS481 4.2 9.6 1.0 CG A:GLU505 4.2 9.7 1.0 CZ A:TYR549 4.4 17.4 1.0 CE2 A:TYR549 4.5 15.6 1.0 CB A:ALA508 4.5 9.3 1.0 OE1 A:GLU478 4.5 15.4 1.0 CA A:GLU505 4.6 10.2 1.0 CB A:GLU505 4.7 9.8 1.0

Y.Wang, H.Y.Cao, M.Peng. Crystal Structure of the Collagenase Unit of A Vibrio Collagenase From Vibrio Harveyi VHJR7 To Be Published.