Zinc in PDB 7tny: Cryo-Em Structure of Rig-I in Complex with P2DSRNA

Enzymatic activity of Cryo-Em Structure of Rig-I in Complex with P2DSRNA

All present enzymatic activity of Cryo-Em Structure of Rig-I in Complex with P2DSRNA:
3.6.4.13;

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Rig-I in Complex with P2DSRNA (pdb code 7tny). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Rig-I in Complex with P2DSRNA, PDB code: 7tny:

Zinc binding site 1 out of 1 in 7tny

Go back to Zinc Binding Sites List in 7tny
Zinc binding site 1 out of 1 in the Cryo-Em Structure of Rig-I in Complex with P2DSRNA


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Rig-I in Complex with P2DSRNA within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:20.8
occ:1.00
SG A:CYS864 2.5 41.6 1.0
CB A:CYS813 2.6 37.7 1.0
SG A:CYS810 2.6 29.9 1.0
SG A:CYS869 2.9 43.0 1.0
CB A:CYS810 3.1 30.7 1.0
SG A:CYS813 3.2 42.2 1.0
CG A:ARG866 3.6 70.7 1.0
CB A:CYS869 3.6 44.2 1.0
CB A:CYS864 3.8 40.9 1.0
CA A:CYS813 3.9 37.1 1.0
CB A:ARG866 4.1 66.6 1.0
CB A:ALA815 4.2 49.0 1.0
N A:CYS813 4.2 36.4 1.0
C A:CYS813 4.6 37.4 1.0
CA A:CYS810 4.6 30.3 1.0
N A:ALA815 4.7 46.0 1.0
CZ2 A:TRP873 4.8 25.6 1.0
CD A:ARG866 4.9 74.8 1.0
N A:LYS814 4.9 39.4 1.0
NE1 A:TRP873 4.9 25.3 1.0

Reference:

W.Wang, A.M.Pyle. The Rig-I Receptor Adopts Two Different Conformations For Distinguishing Host From Viral Rna Ligands. Mol.Cell V. 82 4131 2022.
ISSN: ISSN 1097-2765
PubMed: 36272408
DOI: 10.1016/J.MOLCEL.2022.09.029
Page generated: Sat Apr 8 03:43:45 2023

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