Zinc in PDB 7tmv: Crystal Structure of A Putative Structural Protein From Klebsiella Pneumoniae

The structure of Crystal Structure of A Putative Structural Protein From Klebsiella Pneumoniae, PDB code: 7tmv was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.33 / 2.30
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	62.227, 104.652, 45.889, 90, 90, 90
R / Rfree (%)	22.6 / 26.7

The binding sites of Zinc atom in the Crystal Structure of A Putative Structural Protein From Klebsiella Pneumoniae (pdb code 7tmv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of A Putative Structural Protein From Klebsiella Pneumoniae, PDB code: 7tmv:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of A Putative Structural Protein From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Structural Protein From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:58.0 occ:1.00 OE1 A:GLU151 2.3 49.8 1.0 OE1 A:GLU121 2.3 44.4 1.0 NE2 A:HIS55 2.3 47.7 1.0 OE1 A:GLU118 2.5 42.9 1.0 ZN A:ZN202 2.7 89.1 1.0 CE1 A:HIS55 3.0 43.9 1.0 OE2 A:GLU118 3.1 41.8 1.0 CD A:GLU151 3.1 48.0 1.0 CD A:GLU118 3.1 44.3 1.0 CD A:GLU121 3.3 46.3 1.0 OE2 A:GLU151 3.4 49.3 1.0 CD2 A:HIS55 3.5 43.5 1.0 OE2 A:GLU121 3.7 50.5 1.0 CD1 A:LEU32 4.1 44.4 1.0 ND1 A:HIS55 4.2 45.6 1.0 CG A:GLU151 4.4 43.4 1.0 OG1 A:THR59 4.4 49.4 1.0 OE1 A:GLN62 4.4 52.8 1.0 NE2 A:GLN62 4.5 47.5 1.0 CG A:HIS55 4.5 47.9 1.0 CG A:GLU121 4.6 45.3 1.0 CG A:GLU118 4.6 38.1 1.0 CB A:GLU151 4.7 42.4 1.0 CB A:GLU121 4.8 40.3 1.0 CA A:GLU151 4.8 42.8 1.0 CA A:GLU118 4.9 36.4 1.0 CD A:GLN62 4.9 50.2 1.0 OE1 A:GLU29 5.0 47.8 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of A Putative Structural Protein From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Putative Structural Protein From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn202 b:89.1 occ:1.00 OE1 A:GLN62 2.3 52.8 1.0 OE2 A:GLU151 2.4 49.3 1.0 OE2 A:GLU29 2.5 48.2 1.0 OE2 A:GLU121 2.5 50.5 1.0 OE1 A:GLU29 2.5 47.8 1.0 ZN A:ZN201 2.7 58.0 1.0 CD A:GLU29 2.8 47.6 1.0 CD A:GLU121 3.0 46.3 1.0 OE1 A:GLU121 3.1 44.4 1.0 CD A:GLU151 3.2 48.0 1.0 OE1 A:GLU151 3.3 49.8 1.0 CD A:GLN62 3.3 50.2 1.0 NE2 A:GLN62 3.7 47.5 1.0 CD1 A:LEU32 3.9 44.4 1.0 OG1 A:THR59 3.9 49.4 1.0 NE2 A:HIS55 4.2 47.7 1.0 CG2 A:THR59 4.3 50.5 1.0 CG A:GLU29 4.4 44.6 1.0 CG A:GLU121 4.4 45.3 1.0 CB A:THR59 4.6 47.9 1.0 CE1 A:HIS55 4.6 43.9 1.0 CA A:THR59 4.7 49.7 1.0 CG A:GLU151 4.7 43.4 1.0 CG A:GLN62 4.7 46.2 1.0 CB A:GLU121 4.9 40.3 1.0 CB A:GLN62 4.9 46.7 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of A Putative Structural Protein From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Putative Structural Protein From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:63.9 occ:1.00 OE1 B:GLU121 2.3 47.7 1.0 OE1 B:GLU151 2.3 48.0 1.0 NE2 B:HIS55 2.3 56.0 1.0 OE1 B:GLU118 2.3 51.6 1.0 CD B:GLU151 3.1 50.6 1.0 CD B:GLU118 3.1 50.7 1.0 CD B:GLU121 3.2 48.0 1.0 CE1 B:HIS55 3.2 54.8 1.0 ZN B:ZN202 3.2 79.2 1.0 CD2 B:HIS55 3.2 52.8 1.0 OE2 B:GLU118 3.3 49.4 1.0 OE2 B:GLU151 3.3 50.3 1.0 OE2 B:GLU121 3.4 49.8 1.0 CD1 B:LEU32 4.0 50.3 1.0 NE2 B:GLN62 4.2 51.9 1.0 ND1 B:HIS55 4.3 54.9 1.0 CG B:HIS55 4.4 55.8 1.0 CG B:GLU121 4.5 43.0 1.0 CG B:GLU151 4.5 48.6 1.0 OG1 B:THR59 4.6 53.9 1.0 CG B:GLU118 4.6 45.7 1.0 OE1 B:GLN62 4.7 56.0 1.0 CB B:GLU121 4.8 42.5 1.0 CB B:GLU151 4.9 44.3 1.0 CA B:GLU118 4.9 42.0 1.0 CD B:GLN62 4.9 52.9 1.0 CA B:GLU151 5.0 46.2 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of A Putative Structural Protein From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Putative Structural Protein From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn202 b:79.2 occ:1.00 OE2 B:GLU121 2.2 49.8 1.0 OE1 B:GLN62 2.3 56.0 1.0 OE1 B:GLU29 2.4 46.8 1.0 OE2 B:GLU151 2.4 50.3 1.0 OE2 B:GLU29 2.5 46.4 1.0 CD B:GLU29 2.8 45.3 1.0 CD B:GLN62 2.9 52.9 1.0 NE2 B:GLN62 2.9 51.9 1.0 CD B:GLU121 3.1 48.0 1.0 ZN B:ZN201 3.2 63.9 1.0 CD B:GLU151 3.3 50.6 1.0 OE1 B:GLU121 3.5 47.7 1.0 OE1 B:GLU151 3.6 48.0 1.0 CG2 B:THR59 4.2 49.6 1.0 CG B:GLN62 4.2 48.2 1.0 CG B:GLU29 4.3 44.7 1.0 CG B:GLU121 4.4 43.0 1.0 OG1 B:THR59 4.5 53.9 1.0 CB B:GLN62 4.5 45.3 1.0 CG B:GLU151 4.6 48.6 1.0 CE2 B:TYR125 4.7 39.1 1.0 CD1 B:LEU32 4.7 50.3 1.0 CB B:THR59 4.7 52.7 1.0 NE2 B:HIS55 4.8 56.0 1.0 CA B:THR59 4.8 50.8 1.0 CG2 B:THR147 4.8 43.7 1.0 CB B:GLU121 4.9 42.5 1.0 OH B:TYR125 4.9 40.6 1.0 CB B:GLU29 5.0 42.3 1.0

L.Liu, S.Lovell, K.P.Battaile, L.Tillery, R.Shek, J.K.Craig, L.K.Barrett, W.C.Van Voorhis. Crystal Structure of A Putative Structural Protein From Klebsiella Pneumoniae To Be Published.