Zinc in PDB 7roy: The Structure of the FEM1B:FNIP1 Complex

Protein crystallography data

The structure of The Structure of the FEM1B:FNIP1 Complex, PDB code: 7roy was solved by C.L.Gee, E.L.Mena, A.G.Manford, M.Rape, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.33 / 2.90
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 164.475, 164.475, 465.39, 90, 90, 90
R / Rfree (%) 20.6 / 23

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structure of the FEM1B:FNIP1 Complex (pdb code 7roy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the The Structure of the FEM1B:FNIP1 Complex, PDB code: 7roy:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 7roy

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Zinc binding site 1 out of 8 in the The Structure of the FEM1B:FNIP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of the FEM1B:FNIP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:80.3
occ:1.00
NE2 A:HIS218 2.3 84.0 1.0
SG G:CYS585 2.3 72.8 1.0
SG A:CYS186 2.3 77.7 1.0
SG G:CYS582 2.4 70.7 1.0
CB A:CYS186 2.9 77.2 1.0
CD2 A:HIS218 3.1 79.5 1.0
CB G:CYS582 3.1 70.9 1.0
CE1 A:HIS218 3.4 96.0 1.0
CB G:CYS585 3.8 93.3 1.0
N G:CYS585 3.9 78.3 1.0
ZN G:ZN1001 4.1 81.8 1.0
CA G:CYS585 4.2 81.6 1.0
CG A:HIS218 4.3 87.2 1.0
CA A:CYS186 4.4 80.0 1.0
C G:TYR584 4.4 84.0 1.0
ND1 A:HIS218 4.4 101.2 1.0
CA G:CYS582 4.6 82.4 1.0
CB A:ALA188 4.7 60.3 1.0
CB G:TYR584 4.8 80.8 1.0
O G:TYR584 4.9 100.6 1.0
C G:CYS582 5.0 89.4 1.0
NE2 A:HIS185 5.0 87.8 1.0
CA G:TYR584 5.0 82.7 1.0

Zinc binding site 2 out of 8 in 7roy

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Zinc binding site 2 out of 8 in the The Structure of the FEM1B:FNIP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of the FEM1B:FNIP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn402

b:143.2
occ:0.89
SG B:CYS186 2.4 85.8 1.0
CB B:CYS186 2.6 82.9 1.0
O B:CYS186 4.0 73.7 1.0
CA B:CYS186 4.0 68.1 1.0
CD2 B:HIS218 4.0 94.5 1.0
NE2 B:HIS218 4.2 113.3 1.0
C B:CYS186 4.3 67.7 1.0
ZN B:ZN403 4.5 131.0 1.0
CB B:ALA188 4.6 51.6 1.0
N B:CYS186 4.9 75.4 1.0

Zinc binding site 3 out of 8 in 7roy

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Zinc binding site 3 out of 8 in the The Structure of the FEM1B:FNIP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Structure of the FEM1B:FNIP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn403

b:131.0
occ:1.00
SG B:CYS186 3.3 85.8 1.0
CB B:CYS186 3.8 82.9 1.0
N B:CYS186 4.3 75.4 1.0
ZN B:ZN402 4.5 143.2 0.9
CA B:CYS186 4.7 68.1 1.0
CB B:TYR153 4.9 38.9 1.0
C B:HIS185 4.9 82.2 1.0
CB B:HIS185 4.9 65.5 1.0

Zinc binding site 4 out of 8 in 7roy

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Zinc binding site 4 out of 8 in the The Structure of the FEM1B:FNIP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Structure of the FEM1B:FNIP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn402

b:58.3
occ:0.98
NE2 C:HIS218 2.1 50.1 1.0
SG H:CYS582 2.3 55.4 1.0
SG C:CYS186 2.3 54.3 1.0
SG H:CYS585 2.3 49.4 1.0
CD2 C:HIS218 2.9 57.9 1.0
CB C:CYS186 3.0 46.0 1.0
CE1 C:HIS218 3.1 68.5 1.0
CB H:CYS582 3.2 54.4 1.0
CB H:CYS585 3.6 60.4 1.0
N H:CYS585 3.8 67.8 1.0
CA H:CYS585 3.9 58.3 1.0
CG C:HIS218 4.1 65.1 1.0
ND1 C:HIS218 4.2 70.5 1.0
C H:TYR584 4.3 70.1 1.0
ZN H:ZN1001 4.3 60.6 1.0
CA C:CYS186 4.5 46.0 1.0
CA H:CYS582 4.6 59.3 1.0
CB C:ALA188 4.7 52.4 1.0
O H:TYR584 4.7 74.3 1.0
O C:CYS186 4.9 54.8 1.0
C C:CYS186 5.0 50.6 1.0
NE2 C:HIS185 5.0 57.2 1.0

Zinc binding site 5 out of 8 in 7roy

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Zinc binding site 5 out of 8 in the The Structure of the FEM1B:FNIP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of The Structure of the FEM1B:FNIP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn402

b:158.0
occ:0.90
SG D:CYS186 2.4 112.4 1.0
CB D:CYS186 2.8 112.5 1.0
O D:CYS186 3.7 102.8 1.0
CD2 D:HIS218 3.8 127.6 1.0
CA D:CYS186 4.1 110.1 1.0
NE2 D:HIS218 4.1 135.5 1.0
C D:CYS186 4.3 99.3 1.0
CB D:ALA188 4.3 81.0 1.0
ZN D:ZN403 4.9 132.9 1.0
N D:ALA188 5.0 92.9 1.0

Zinc binding site 6 out of 8 in 7roy

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Zinc binding site 6 out of 8 in the The Structure of the FEM1B:FNIP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of The Structure of the FEM1B:FNIP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn403

b:132.9
occ:1.00
SG D:CYS186 3.3 112.4 1.0
CB D:CYS186 3.5 112.5 1.0
N D:CYS186 3.8 99.2 1.0
CA D:CYS186 4.2 110.1 1.0
CB D:HIS185 4.3 86.6 1.0
CD1 D:TYR153 4.6 86.2 1.0
C D:HIS185 4.6 101.2 1.0
CB D:TYR153 4.8 82.9 1.0
CA D:HIS185 4.8 90.5 1.0
ZN D:ZN402 4.9 158.0 0.9
N D:HIS185 4.9 94.6 1.0
CG D:TYR153 5.0 82.7 1.0

Zinc binding site 7 out of 8 in 7roy

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Zinc binding site 7 out of 8 in the The Structure of the FEM1B:FNIP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of The Structure of the FEM1B:FNIP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn1001

b:81.8
occ:1.00
NE2 A:HIS185 2.1 87.8 1.0
NE2 G:HIS587 2.2 87.2 1.0
SG G:CYS580 2.4 79.0 1.0
SG G:CYS585 2.4 72.8 1.0
CD2 A:HIS185 3.0 85.5 1.0
CE1 G:HIS587 3.1 89.7 1.0
CB G:CYS585 3.1 93.3 1.0
CE1 A:HIS185 3.2 101.7 1.0
CD2 G:HIS587 3.2 89.5 1.0
CB G:CYS580 3.5 83.6 1.0
ZN A:ZN402 4.1 80.3 1.0
CG A:HIS185 4.1 79.4 1.0
ND1 A:HIS185 4.2 93.5 1.0
ND1 G:HIS587 4.2 101.9 1.0
CB G:CYS582 4.3 70.9 1.0
CG G:HIS587 4.3 110.0 1.0
SG A:CYS186 4.4 77.7 1.0
CA G:CYS585 4.6 81.6 1.0
CB A:CYS186 4.7 77.2 1.0
CB A:TYR153 4.8 85.7 1.0
CG A:TYR153 4.9 78.0 1.0
CD1 A:TYR153 4.9 84.3 1.0
CA G:CYS580 4.9 76.7 1.0

Zinc binding site 8 out of 8 in 7roy

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Zinc binding site 8 out of 8 in the The Structure of the FEM1B:FNIP1 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of The Structure of the FEM1B:FNIP1 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn1001

b:60.6
occ:1.00
NE2 C:HIS185 2.1 57.2 1.0
NE2 H:HIS587 2.1 57.8 1.0
SG H:CYS580 2.3 59.4 1.0
SG H:CYS585 2.4 49.4 1.0
CE1 H:HIS587 2.8 59.1 1.0
CB H:CYS585 3.1 60.4 1.0
CD2 C:HIS185 3.1 56.8 1.0
CE1 C:HIS185 3.1 68.2 1.0
CD2 H:HIS587 3.3 79.6 1.0
CB H:CYS580 3.4 73.5 1.0
ND1 H:HIS587 4.0 68.5 1.0
ND1 C:HIS185 4.2 58.0 1.0
CG C:HIS185 4.2 50.3 1.0
CG H:HIS587 4.3 84.7 1.0
CB H:CYS582 4.3 54.4 1.0
ZN C:ZN402 4.3 58.3 1.0
SG C:CYS186 4.5 54.3 1.0
CA H:CYS585 4.5 58.3 1.0
CD1 C:TYR153 4.6 61.5 1.0
CA H:CYS580 4.8 74.3 1.0
CB C:CYS186 4.8 46.0 1.0
CG C:TYR153 4.9 61.3 1.0
CB C:TYR153 4.9 49.8 1.0

Reference:

A.G.Manford, E.L.Mena, K.Y.Shih, C.L.Gee, R.Mcminimy, B.Martinez-Gonzales, R.Sherriff, B.Lew, M.Zoltek, F.Rodrigues-Perez, M.Woldesenbet, J.Kuriyan, M.Rape. Structural Basis and Regulation of the Reductive Stress Response To Be Published.
Page generated: Fri Nov 5 17:00:19 2021

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