Zinc in PDB 7qta: S1 Nuclease From Aspergillus Oryzae in Complex with Uridine
Enzymatic activity of S1 Nuclease From Aspergillus Oryzae in Complex with Uridine
All present enzymatic activity of S1 Nuclease From Aspergillus Oryzae in Complex with Uridine:
3.1.30.1;
Protein crystallography data
The structure of S1 Nuclease From Aspergillus Oryzae in Complex with Uridine, PDB code: 7qta
was solved by
K.Adamkova,
T.Koval,
P.Kolenko,
L.H.Oestergaard,
J.Dohnalek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
44.20 /
1.06
|
|
Space group
|
P 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
43.04,
48.186,
65.232,
107.18,
90.11,
105.62
|
|
R / Rfree (%)
|
11.8 /
14.7
|
Other elements in 7qta:
The structure of S1 Nuclease From Aspergillus Oryzae in Complex with Uridine also contains other interesting chemical elements:
Zinc Binding Sites:
The binding sites of Zinc atom in the S1 Nuclease From Aspergillus Oryzae in Complex with Uridine
(pdb code 7qta). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the
S1 Nuclease From Aspergillus Oryzae in Complex with Uridine, PDB code: 7qta:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
Zinc binding site 1 out
of 6 in 7qta
Go back to
Zinc Binding Sites List in 7qta
Zinc binding site 1 out
of 6 in the S1 Nuclease From Aspergillus Oryzae in Complex with Uridine
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of S1 Nuclease From Aspergillus Oryzae in Complex with Uridine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn401
b:8.3
occ:1.00
|
O2
|
A:PO4406
|
1.9
|
12.3
|
0.2
|
|
O
|
A:HOH670
|
2.0
|
6.6
|
0.5
|
|
NE2
|
A:HIS26
|
2.0
|
7.8
|
1.0
|
|
O4
|
A:PO4406
|
2.0
|
12.2
|
0.3
|
|
N
|
A:TRP21
|
2.1
|
8.8
|
1.0
|
|
OD1
|
A:ASP139
|
2.1
|
8.1
|
1.0
|
|
O
|
A:TRP21
|
2.2
|
8.6
|
1.0
|
|
C
|
A:TRP21
|
2.9
|
8.0
|
1.0
|
|
CA
|
A:TRP21
|
2.9
|
9.2
|
1.0
|
|
CE1
|
A:HIS26
|
3.0
|
7.7
|
1.0
|
|
CD2
|
A:HIS26
|
3.0
|
8.1
|
1.0
|
|
P
|
A:PO4406
|
3.1
|
11.3
|
0.2
|
|
CG
|
A:ASP139
|
3.1
|
7.4
|
1.0
|
|
P
|
A:PO4406
|
3.1
|
12.0
|
0.3
|
|
O2
|
A:PO4406
|
3.3
|
13.6
|
0.3
|
|
ZN
|
A:ZN402
|
3.3
|
9.0
|
1.0
|
|
O
|
A:HOH519
|
3.4
|
13.6
|
0.5
|
|
O1
|
A:PO4406
|
3.5
|
12.5
|
0.2
|
|
OD2
|
A:ASP139
|
3.5
|
8.2
|
1.0
|
|
O4
|
A:PO4406
|
3.5
|
9.5
|
0.2
|
|
CB
|
A:TRP21
|
3.6
|
9.1
|
1.0
|
|
OD2
|
A:ASP65
|
3.9
|
12.5
|
1.0
|
|
NE2
|
A:HIS135
|
3.9
|
8.4
|
1.0
|
|
O1
|
A:PO4406
|
3.9
|
11.9
|
0.3
|
|
CE1
|
A:HIS135
|
4.1
|
8.3
|
1.0
|
|
CE1
|
A:HIS145
|
4.1
|
9.3
|
1.0
|
|
ND1
|
A:HIS26
|
4.1
|
7.9
|
1.0
|
|
CG
|
A:HIS26
|
4.1
|
7.9
|
1.0
|
|
N
|
A:GLY22
|
4.2
|
8.9
|
1.0
|
|
NE2
|
A:HIS145
|
4.2
|
9.7
|
1.0
|
|
O3
|
A:PO4406
|
4.3
|
8.2
|
0.2
|
|
CG
|
A:TRP21
|
4.3
|
9.0
|
1.0
|
|
O3
|
A:PO4406
|
4.4
|
11.4
|
0.3
|
|
CB
|
A:ASP139
|
4.4
|
7.3
|
1.0
|
|
CD1
|
A:TRP21
|
4.4
|
9.0
|
1.0
|
|
OD1
|
A:ASP172
|
4.6
|
9.6
|
1.0
|
|
ZN
|
A:ZN403
|
4.6
|
10.9
|
1.0
|
|
CA
|
A:ASP139
|
4.7
|
7.6
|
1.0
|
|
CG
|
A:ASP65
|
4.8
|
11.7
|
1.0
|
|
OD1
|
A:ASP65
|
4.8
|
11.6
|
1.0
|
|
ND1
|
A:HIS145
|
4.9
|
9.2
|
1.0
|
|
CD2
|
A:HIS135
|
4.9
|
7.9
|
1.0
|
|
O
|
A:GLY22
|
4.9
|
8.6
|
1.0
|
|
CA
|
A:GLY22
|
5.0
|
9.8
|
1.0
|
|
Zinc binding site 2 out
of 6 in 7qta
Go back to
Zinc Binding Sites List in 7qta
Zinc binding site 2 out
of 6 in the S1 Nuclease From Aspergillus Oryzae in Complex with Uridine
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of S1 Nuclease From Aspergillus Oryzae in Complex with Uridine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn402
b:9.0
occ:1.00
|
O
|
A:HOH670
|
1.9
|
6.6
|
0.5
|
|
O4
|
A:PO4406
|
2.0
|
12.2
|
0.3
|
|
OD2
|
A:ASP139
|
2.0
|
8.2
|
1.0
|
|
O4
|
A:PO4406
|
2.0
|
9.5
|
0.2
|
|
ND1
|
A:HIS80
|
2.1
|
8.8
|
1.0
|
|
NE2
|
A:HIS135
|
2.1
|
8.4
|
1.0
|
|
OD1
|
A:ASP65
|
2.7
|
11.6
|
1.0
|
|
CE1
|
A:HIS80
|
2.9
|
9.3
|
1.0
|
|
CG
|
A:ASP139
|
3.0
|
7.4
|
1.0
|
|
CD2
|
A:HIS135
|
3.0
|
7.9
|
1.0
|
|
P
|
A:PO4406
|
3.0
|
12.0
|
0.3
|
|
CE1
|
A:HIS135
|
3.1
|
8.3
|
1.0
|
|
O3
|
A:PO4406
|
3.1
|
11.4
|
0.3
|
|
CG
|
A:HIS80
|
3.2
|
9.3
|
1.0
|
|
P
|
A:PO4406
|
3.2
|
11.3
|
0.2
|
|
OD1
|
A:ASP139
|
3.3
|
8.1
|
1.0
|
|
ZN
|
A:ZN401
|
3.3
|
8.3
|
1.0
|
|
CG
|
A:ASP65
|
3.5
|
11.7
|
1.0
|
|
O2
|
A:PO4406
|
3.5
|
12.3
|
0.2
|
|
CB
|
A:HIS80
|
3.6
|
8.5
|
1.0
|
|
OD2
|
A:ASP65
|
3.6
|
12.5
|
1.0
|
|
O1
|
A:PO4406
|
3.8
|
12.5
|
0.2
|
|
O1
|
A:PO4406
|
3.9
|
11.9
|
0.3
|
|
NE2
|
A:HIS26
|
4.0
|
7.8
|
1.0
|
|
NE2
|
A:HIS80
|
4.1
|
10.1
|
1.0
|
|
CG
|
A:HIS135
|
4.2
|
8.2
|
1.0
|
|
ND1
|
A:HIS135
|
4.2
|
8.6
|
1.0
|
|
CD2
|
A:HIS80
|
4.2
|
10.3
|
1.0
|
|
O2
|
A:PO4406
|
4.2
|
13.6
|
0.3
|
|
CE1
|
A:HIS145
|
4.3
|
9.3
|
1.0
|
|
NZ
|
A:LYS68
|
4.3
|
23.4
|
1.0
|
|
CB
|
A:ASP139
|
4.4
|
7.3
|
1.0
|
|
CE1
|
A:HIS26
|
4.4
|
7.7
|
1.0
|
|
O
|
A:HOH519
|
4.5
|
13.6
|
0.5
|
|
O3
|
A:PO4406
|
4.5
|
8.2
|
0.2
|
|
CA
|
A:HIS80
|
4.6
|
8.5
|
1.0
|
|
O2'
|
A:URI407
|
4.8
|
20.5
|
0.8
|
|
CB
|
A:ASP65
|
4.9
|
10.8
|
1.0
|
|
O
|
A:TRP21
|
4.9
|
8.6
|
1.0
|
|
ND1
|
A:HIS145
|
4.9
|
9.2
|
1.0
|
|
CD2
|
A:HIS26
|
5.0
|
8.1
|
1.0
|
|
Zinc binding site 3 out
of 6 in 7qta
Go back to
Zinc Binding Sites List in 7qta
Zinc binding site 3 out
of 6 in the S1 Nuclease From Aspergillus Oryzae in Complex with Uridine
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of S1 Nuclease From Aspergillus Oryzae in Complex with Uridine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn403
b:10.9
occ:1.00
|
O2
|
A:PO4406
|
1.9
|
13.6
|
0.3
|
|
NE2
|
A:HIS168
|
2.0
|
9.3
|
1.0
|
|
O
|
A:HOH519
|
2.0
|
13.6
|
0.5
|
|
NE2
|
A:HIS145
|
2.0
|
9.7
|
1.0
|
|
OD2
|
A:ASP172
|
2.1
|
13.5
|
1.0
|
|
O3
|
A:PO4406
|
2.2
|
8.2
|
0.2
|
|
O
|
A:HOH697
|
2.2
|
5.8
|
0.2
|
|
OD1
|
A:ASP172
|
2.6
|
9.6
|
1.0
|
|
CG
|
A:ASP172
|
2.7
|
9.4
|
1.0
|
|
O2
|
A:PO4406
|
2.9
|
12.3
|
0.2
|
|
CE1
|
A:HIS145
|
2.9
|
9.3
|
1.0
|
|
CD2
|
A:HIS168
|
3.0
|
9.8
|
1.0
|
|
CE1
|
A:HIS168
|
3.0
|
9.4
|
1.0
|
|
P
|
A:PO4406
|
3.1
|
11.3
|
0.2
|
|
CD2
|
A:HIS145
|
3.1
|
9.1
|
1.0
|
|
P
|
A:PO4406
|
3.3
|
12.0
|
0.3
|
|
O3
|
A:PO4406
|
3.8
|
11.4
|
0.3
|
|
O4'
|
A:URI407
|
3.9
|
15.8
|
0.8
|
|
C1'
|
A:URI407
|
4.0
|
14.5
|
0.8
|
|
C4'
|
A:URI407
|
4.1
|
19.9
|
0.8
|
|
ND1
|
A:HIS145
|
4.1
|
9.2
|
1.0
|
|
O1
|
A:PO4406
|
4.1
|
12.5
|
0.2
|
|
N
|
A:TRP21
|
4.1
|
8.8
|
1.0
|
|
CB
|
A:ASP172
|
4.1
|
8.9
|
1.0
|
|
ND1
|
A:HIS168
|
4.2
|
9.5
|
1.0
|
|
CG
|
A:HIS168
|
4.2
|
9.3
|
1.0
|
|
O1
|
A:PO4406
|
4.2
|
11.9
|
0.3
|
|
O4
|
A:PO4406
|
4.2
|
9.5
|
0.2
|
|
CG
|
A:HIS145
|
4.2
|
7.9
|
1.0
|
|
O
|
A:HOH620
|
4.2
|
21.0
|
1.0
|
|
O4
|
A:PO4406
|
4.2
|
12.2
|
0.3
|
|
O
|
A:HOH501
|
4.3
|
14.1
|
0.2
|
|
NE2
|
A:GLN142
|
4.4
|
8.9
|
1.0
|
|
O
|
A:HOH670
|
4.5
|
6.6
|
0.5
|
|
O
|
A:HOH700
|
4.5
|
18.8
|
1.0
|
|
O2'
|
A:URI407
|
4.5
|
20.5
|
0.8
|
|
O2
|
A:URI407
|
4.6
|
13.3
|
0.8
|
|
ZN
|
A:ZN401
|
4.6
|
8.3
|
1.0
|
|
O5'
|
A:URI407
|
4.7
|
26.9
|
0.8
|
|
CE1
|
A:PHE81
|
4.7
|
8.8
|
0.2
|
|
C2'
|
A:URI407
|
4.8
|
16.5
|
0.8
|
|
CA
|
A:TRP21
|
4.9
|
9.2
|
1.0
|
|
O
|
A:TRP21
|
4.9
|
8.6
|
1.0
|
|
C
|
A:TRP21
|
5.0
|
8.0
|
1.0
|
|
Zinc binding site 4 out
of 6 in 7qta
Go back to
Zinc Binding Sites List in 7qta
Zinc binding site 4 out
of 6 in the S1 Nuclease From Aspergillus Oryzae in Complex with Uridine
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of S1 Nuclease From Aspergillus Oryzae in Complex with Uridine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn401
b:8.9
occ:1.00
|
O2
|
B:PO4406
|
1.9
|
10.1
|
0.3
|
|
O3
|
B:PO4406
|
1.9
|
9.4
|
0.2
|
|
NE2
|
B:HIS26
|
2.0
|
8.2
|
1.0
|
|
O
|
B:HOH1093
|
2.0
|
8.6
|
0.5
|
|
OD1
|
B:ASP139
|
2.1
|
8.2
|
1.0
|
|
N
|
B:TRP21
|
2.1
|
9.2
|
1.0
|
|
O
|
B:TRP21
|
2.2
|
9.0
|
1.0
|
|
C
|
B:TRP21
|
2.9
|
8.6
|
1.0
|
|
CA
|
B:TRP21
|
3.0
|
9.3
|
1.0
|
|
CE1
|
B:HIS26
|
3.0
|
8.3
|
1.0
|
|
CD2
|
B:HIS26
|
3.0
|
8.5
|
1.0
|
|
P
|
B:PO4406
|
3.0
|
11.1
|
0.3
|
|
CG
|
B:ASP139
|
3.1
|
7.9
|
1.0
|
|
P
|
B:PO4406
|
3.2
|
8.8
|
0.2
|
|
O3
|
B:PO4406
|
3.2
|
12.5
|
0.3
|
|
ZN
|
B:ZN402
|
3.4
|
9.4
|
1.0
|
|
O
|
B:HOH931
|
3.5
|
19.4
|
0.5
|
|
OD2
|
B:ASP139
|
3.5
|
9.6
|
1.0
|
|
O2
|
B:PO4406
|
3.6
|
9.3
|
0.2
|
|
CB
|
B:TRP21
|
3.7
|
9.0
|
1.0
|
|
O1
|
B:PO4406
|
3.7
|
11.6
|
0.2
|
|
O1
|
B:PO4406
|
3.8
|
13.1
|
0.3
|
|
NE2
|
B:HIS135
|
3.9
|
9.0
|
1.0
|
|
OD2
|
B:ASP65
|
3.9
|
13.3
|
1.0
|
|
CE1
|
B:HIS135
|
4.1
|
9.2
|
1.0
|
|
CE1
|
B:HIS145
|
4.1
|
9.8
|
1.0
|
|
ND1
|
B:HIS26
|
4.1
|
8.3
|
1.0
|
|
CG
|
B:HIS26
|
4.2
|
8.4
|
1.0
|
|
O4
|
B:PO4406
|
4.2
|
12.5
|
0.3
|
|
N
|
B:GLY22
|
4.2
|
9.8
|
1.0
|
|
NE2
|
B:HIS145
|
4.3
|
10.0
|
1.0
|
|
CG
|
B:TRP21
|
4.4
|
9.0
|
1.0
|
|
CB
|
B:ASP139
|
4.4
|
8.1
|
1.0
|
|
O4
|
B:PO4406
|
4.4
|
8.0
|
0.2
|
|
CD1
|
B:TRP21
|
4.4
|
9.4
|
1.0
|
|
ZN
|
B:ZN403
|
4.6
|
11.3
|
1.0
|
|
OD1
|
B:ASP172
|
4.6
|
10.0
|
1.0
|
|
CA
|
B:ASP139
|
4.7
|
7.7
|
1.0
|
|
CG
|
B:ASP65
|
4.8
|
12.0
|
1.0
|
|
OD1
|
B:ASP65
|
4.8
|
12.3
|
1.0
|
|
CD2
|
B:HIS135
|
4.9
|
9.0
|
1.0
|
|
O
|
B:GLY22
|
4.9
|
9.0
|
1.0
|
|
ND1
|
B:HIS145
|
4.9
|
9.2
|
1.0
|
|
CA
|
B:GLY22
|
5.0
|
9.4
|
1.0
|
|
Zinc binding site 5 out
of 6 in 7qta
Go back to
Zinc Binding Sites List in 7qta
Zinc binding site 5 out
of 6 in the S1 Nuclease From Aspergillus Oryzae in Complex with Uridine
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of S1 Nuclease From Aspergillus Oryzae in Complex with Uridine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn402
b:9.4
occ:1.00
|
O
|
B:HOH1093
|
1.9
|
8.6
|
0.5
|
|
OD2
|
B:ASP139
|
2.0
|
9.6
|
1.0
|
|
ND1
|
B:HIS80
|
2.0
|
9.6
|
1.0
|
|
NE2
|
B:HIS135
|
2.0
|
9.0
|
1.0
|
|
O2
|
B:PO4406
|
2.1
|
9.3
|
0.2
|
|
O2
|
B:PO4406
|
2.1
|
10.1
|
0.3
|
|
OD1
|
B:ASP65
|
2.7
|
12.3
|
1.0
|
|
CE1
|
B:HIS80
|
2.9
|
10.3
|
1.0
|
|
CG
|
B:ASP139
|
3.0
|
7.9
|
1.0
|
|
CD2
|
B:HIS135
|
3.0
|
9.0
|
1.0
|
|
O4
|
B:PO4406
|
3.0
|
12.5
|
0.3
|
|
CE1
|
B:HIS135
|
3.1
|
9.2
|
1.0
|
|
P
|
B:PO4406
|
3.1
|
11.1
|
0.3
|
|
CG
|
B:HIS80
|
3.1
|
10.0
|
1.0
|
|
P
|
B:PO4406
|
3.2
|
8.8
|
0.2
|
|
OD1
|
B:ASP139
|
3.3
|
8.2
|
1.0
|
|
ZN
|
B:ZN401
|
3.4
|
8.9
|
1.0
|
|
O3
|
B:PO4406
|
3.5
|
9.4
|
0.2
|
|
CG
|
B:ASP65
|
3.5
|
12.0
|
1.0
|
|
CB
|
B:HIS80
|
3.6
|
9.7
|
1.0
|
|
OD2
|
B:ASP65
|
3.7
|
13.3
|
1.0
|
|
O1
|
B:PO4406
|
3.8
|
11.6
|
0.2
|
|
O1
|
B:PO4406
|
4.0
|
13.1
|
0.3
|
|
NE2
|
B:HIS26
|
4.0
|
8.2
|
1.0
|
|
NE2
|
B:HIS80
|
4.1
|
10.8
|
1.0
|
|
CG
|
B:HIS135
|
4.2
|
8.8
|
1.0
|
|
CD2
|
B:HIS80
|
4.2
|
10.5
|
1.0
|
|
ND1
|
B:HIS135
|
4.2
|
9.4
|
1.0
|
|
O3
|
B:PO4406
|
4.3
|
12.5
|
0.3
|
|
CB
|
B:ASP139
|
4.3
|
8.1
|
1.0
|
|
CE1
|
B:HIS145
|
4.3
|
9.8
|
1.0
|
|
NZ
|
B:LYS68
|
4.4
|
24.6
|
1.0
|
|
CE1
|
B:HIS26
|
4.4
|
8.3
|
1.0
|
|
O
|
B:HOH931
|
4.5
|
19.4
|
0.5
|
|
O4
|
B:PO4406
|
4.5
|
8.0
|
0.2
|
|
CA
|
B:HIS80
|
4.6
|
8.9
|
1.0
|
|
CB
|
B:ASP65
|
4.9
|
11.2
|
1.0
|
|
O
|
B:TRP21
|
4.9
|
9.0
|
1.0
|
|
O2'
|
B:URI407
|
4.9
|
16.8
|
0.8
|
|
ND1
|
B:HIS145
|
5.0
|
9.2
|
1.0
|
|
CD2
|
B:HIS26
|
5.0
|
8.5
|
1.0
|
|
Zinc binding site 6 out
of 6 in 7qta
Go back to
Zinc Binding Sites List in 7qta
Zinc binding site 6 out
of 6 in the S1 Nuclease From Aspergillus Oryzae in Complex with Uridine
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of S1 Nuclease From Aspergillus Oryzae in Complex with Uridine within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn403
b:11.3
occ:1.00
|
O3
|
B:PO4406
|
1.8
|
12.5
|
0.3
|
|
O
|
B:HOH931
|
2.0
|
19.4
|
0.5
|
|
NE2
|
B:HIS168
|
2.0
|
9.4
|
1.0
|
|
NE2
|
B:HIS145
|
2.0
|
10.0
|
1.0
|
|
OD2
|
B:ASP172
|
2.1
|
13.5
|
1.0
|
|
O4
|
B:PO4406
|
2.2
|
8.0
|
0.2
|
|
O
|
B:HOH1154
|
2.3
|
6.7
|
0.2
|
|
OD1
|
B:ASP172
|
2.6
|
10.0
|
1.0
|
|
CG
|
B:ASP172
|
2.7
|
10.0
|
1.0
|
|
O3
|
B:PO4406
|
2.9
|
9.4
|
0.2
|
|
CE1
|
B:HIS145
|
2.9
|
9.8
|
1.0
|
|
CD2
|
B:HIS168
|
3.0
|
10.0
|
1.0
|
|
CE1
|
B:HIS168
|
3.1
|
9.8
|
1.0
|
|
P
|
B:PO4406
|
3.1
|
8.8
|
0.2
|
|
CD2
|
B:HIS145
|
3.1
|
9.2
|
1.0
|
|
P
|
B:PO4406
|
3.2
|
11.1
|
0.3
|
|
O4
|
B:PO4406
|
3.7
|
12.5
|
0.3
|
|
O4'
|
B:URI407
|
4.0
|
14.4
|
0.8
|
|
C4'
|
B:URI407
|
4.0
|
18.2
|
0.8
|
|
C1'
|
B:URI407
|
4.1
|
13.8
|
0.8
|
|
O1
|
B:PO4406
|
4.1
|
13.1
|
0.3
|
|
ND1
|
B:HIS145
|
4.1
|
9.2
|
1.0
|
|
N
|
B:TRP21
|
4.1
|
9.2
|
1.0
|
|
CB
|
B:ASP172
|
4.1
|
9.0
|
1.0
|
|
O1
|
B:PO4406
|
4.1
|
11.6
|
0.2
|
|
O2
|
B:PO4406
|
4.2
|
9.3
|
0.2
|
|
ND1
|
B:HIS168
|
4.2
|
9.8
|
1.0
|
|
O
|
B:HOH1054
|
4.2
|
20.7
|
1.0
|
|
O2
|
B:PO4406
|
4.2
|
10.1
|
0.3
|
|
CG
|
B:HIS168
|
4.2
|
9.6
|
1.0
|
|
CG
|
B:HIS145
|
4.2
|
8.7
|
1.0
|
|
NE2
|
B:GLN142
|
4.4
|
9.4
|
1.0
|
|
O
|
B:HOH1093
|
4.5
|
8.6
|
0.5
|
|
O
|
B:HOH1120
|
4.5
|
20.1
|
1.0
|
|
O2'
|
B:URI407
|
4.5
|
16.8
|
0.8
|
|
ZN
|
B:ZN401
|
4.6
|
8.9
|
1.0
|
|
O5'
|
B:URI407
|
4.6
|
25.5
|
0.8
|
|
O2
|
B:URI407
|
4.7
|
12.5
|
0.8
|
|
C2'
|
B:URI407
|
4.8
|
15.6
|
0.8
|
|
CA
|
B:TRP21
|
4.8
|
9.3
|
1.0
|
|
O
|
B:TRP21
|
4.9
|
9.0
|
1.0
|
|
CE2
|
B:PHE81
|
4.9
|
17.4
|
0.2
|
|
C
|
B:TRP21
|
4.9
|
8.6
|
1.0
|
|
C5'
|
B:URI407
|
5.0
|
19.8
|
0.8
|
|
Reference:
K.Adamkova,
T.Koval',
L.H.Ostergaard,
J.Duskova,
M.Maly,
L.Svecova,
T.Skalova,
P.Kolenko,
J.Dohnalek.
Atomic Resolution Studies of S1 Nuclease Complexes Reveal Details of Rna Interaction with the Enzyme Despite Multiple Lattice-Translocation Defects. Acta Crystallogr D Struct V. 78 1194 2022BIOL.
ISSN: ISSN 2059-7983
PubMed: 36189740
DOI: 10.1107/S2059798322008397
Page generated: Wed Oct 30 10:03:24 2024
|
