Zinc in PDB 7pog: High-Resolution Structure of Native Toxin A From Clostridioides Difficile

The binding sites of Zinc atom in the High-Resolution Structure of Native Toxin A From Clostridioides Difficile (pdb code 7pog). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the High-Resolution Structure of Native Toxin A From Clostridioides Difficile, PDB code: 7pog:

Zinc binding site 1 out of 1 in the High-Resolution Structure of Native Toxin A From Clostridioides Difficile


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of High-Resolution Structure of Native Toxin A From Clostridioides Difficile within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn3001 b:83.0 occ:1.00 CG A:HIS655 2.0 68.5 1.0 OD1 A:ASP545 2.2 88.3 1.0 NE2 A:HIS759 2.3 75.9 1.0 ND1 A:HIS655 2.3 68.5 1.0 SG A:CYS700 2.3 61.6 1.0 CD2 A:HIS655 2.4 68.5 1.0 CB A:HIS655 2.7 68.5 1.0 CE1 A:HIS655 2.8 68.5 1.0 NE2 A:HIS655 2.9 68.5 1.0 CD2 A:HIS759 3.0 75.9 1.0 CG A:ASP545 3.2 88.3 1.0 CA A:HIS655 3.4 68.5 1.0 CE1 A:HIS759 3.4 75.9 1.0 OD2 A:ASP545 3.6 88.3 1.0 CB A:CYS700 3.7 61.6 1.0 CG A:HIS759 4.3 75.9 1.0 ND1 A:HIS759 4.4 75.9 1.0 N A:HIS655 4.4 68.5 1.0 N A:CYS700 4.5 61.6 1.0 C A:HIS655 4.5 68.5 1.0 CB A:ASP545 4.5 88.3 1.0 O A:GLY654 4.6 57.1 1.0 CA A:CYS700 4.7 61.6 1.0 CA A:ASP545 4.8 88.3 1.0 N A:GLY656 4.9 64.1 1.0 C A:GLY654 4.9 57.1 1.0 CG A:GLU544 4.9 83.9 1.0

A.Aminzadeh, C.E.Larsen, T.Boesen, R.Jorgensen. High-Resolution Structure of Native Toxin A From Clostridioides Difficile. Embo Rep. 53597 2021.
ISSN: ESSN 1469-3178
PubMed: 34817920
DOI: 10.15252/EMBR.202153597