Zinc in PDB 7phk: Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn)

Other elements in 7phk:

The structure of Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn) also contains other interesting chemical elements:

Potassium (K) 8 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn) (pdb code 7phk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn), PDB code: 7phk:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 7phk

Go back to Zinc Binding Sites List in 7phk
Zinc binding site 1 out of 8 in the Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn603

b:30.0
occ:1.00
 ND1 A:HIS77 2.0 99.3 1.0
SG B:CYS83 2.3 103.8 1.0
SG A:CYS104 2.3 107.9 1.0
CB B:CYS83 2.5 103.8 1.0
CE1 A:HIS77 2.7 99.3 1.0
SG A:CYS105 2.9 105.6 1.0
CG A:HIS77 3.1 99.3 1.0
CB A:HIS77 3.6 99.3 1.0
CB A:CYS104 3.8 107.9 1.0
NE2 A:HIS77 3.9 99.3 1.0
CB A:CYS105 3.9 105.6 1.0
CD2 A:HIS77 4.0 99.3 1.0
CA B:CYS83 4.0 103.8 1.0
N A:CYS105 4.3 105.6 1.0
CA A:HIS77 4.4 99.3 1.0
CD B:PRO85 4.5 98.1 1.0
C A:CYS104 4.5 107.9 1.0
CB A:GLU102 4.7 104.0 1.0
CA A:CYS104 4.7 107.9 1.0
CA A:CYS105 4.7 105.6 1.0
CG B:PRO85 4.8 98.1 1.0
N B:CYS83 4.8 103.8 1.0
C B:CYS83 4.9 103.8 1.0
N A:CYS78 5.0 102.5 1.0
CB B:PRO85 5.0 98.1 1.0

Zinc binding site 2 out of 8 in 7phk

Go back to Zinc Binding Sites List in 7phk
Zinc binding site 2 out of 8 in the Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn603

b:30.0
occ:1.00
 ND1 C:HIS77 2.1 99.3 1.0
SG D:CYS83 2.3 103.8 1.0
SG C:CYS104 2.3 107.9 1.0
CB D:CYS83 2.5 103.8 1.0
SG C:CYS105 2.7 105.6 1.0
CE1 C:HIS77 2.9 99.3 1.0
CG C:HIS77 3.2 99.3 1.0
CB C:HIS77 3.7 99.3 1.0
CB C:CYS105 3.7 105.6 1.0
CB C:CYS104 3.8 107.9 1.0
NE2 C:HIS77 4.0 99.3 1.0
CA D:CYS83 4.0 103.8 1.0
N C:CYS105 4.1 105.6 1.0
CD2 C:HIS77 4.1 99.3 1.0
CA C:HIS77 4.3 99.3 1.0
C C:CYS104 4.4 107.9 1.0
CD D:PRO85 4.5 98.1 1.0
CA C:CYS105 4.6 105.6 1.0
CA C:CYS104 4.6 107.9 1.0
CB C:GLU102 4.7 104.0 1.0
CG D:PRO85 4.8 98.1 1.0
N D:CYS83 4.8 103.8 1.0
C D:CYS83 4.9 103.8 1.0
N C:CYS78 4.9 102.5 1.0
O C:CYS104 5.0 107.9 1.0
CB D:PRO85 5.0 98.1 1.0

Zinc binding site 3 out of 8 in 7phk

Go back to Zinc Binding Sites List in 7phk
Zinc binding site 3 out of 8 in the Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn601

b:30.0
occ:1.00
 ND1 B:HIS77 2.1 99.3 1.0
SG C:CYS83 2.3 103.8 1.0
SG B:CYS104 2.4 107.9 1.0
CB C:CYS83 2.5 103.8 1.0
SG B:CYS105 2.8 105.6 1.0
CE1 B:HIS77 2.8 99.3 1.0
CG B:HIS77 3.1 99.3 1.0
CB B:HIS77 3.6 99.3 1.0
CB B:CYS105 3.8 105.6 1.0
CB B:CYS104 3.8 107.9 1.0
NE2 B:HIS77 3.9 99.3 1.0
CA C:CYS83 4.0 103.8 1.0
CD2 B:HIS77 4.1 99.3 1.0
N B:CYS105 4.2 105.6 1.0
CA B:HIS77 4.4 99.3 1.0
C B:CYS104 4.5 107.9 1.0
CD C:PRO85 4.5 98.1 1.0
CA B:CYS105 4.6 105.6 1.0
CA B:CYS104 4.7 107.9 1.0
CB B:GLU102 4.7 104.0 1.0
CG C:PRO85 4.8 98.1 1.0
N C:CYS83 4.8 103.8 1.0
C C:CYS83 4.9 103.8 1.0
N B:CYS78 4.9 102.5 1.0
CB C:PRO85 5.0 98.1 1.0

Zinc binding site 4 out of 8 in 7phk

Go back to Zinc Binding Sites List in 7phk
Zinc binding site 4 out of 8 in the Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn601

b:30.0
occ:1.00
 ND1 D:HIS77 2.1 99.3 1.0
SG D:CYS104 2.3 107.9 1.0
SG A:CYS83 2.3 103.8 1.0
CB A:CYS83 2.5 103.8 1.0
CE1 D:HIS77 2.8 99.3 1.0
SG D:CYS105 2.9 105.6 1.0
CG D:HIS77 3.1 99.3 1.0
CB D:HIS77 3.7 99.3 1.0
CB D:CYS104 3.7 107.9 1.0
CB D:CYS105 3.8 105.6 1.0
NE2 D:HIS77 3.9 99.3 1.0
CA A:CYS83 4.0 103.8 1.0
CD2 D:HIS77 4.1 99.3 1.0
N D:CYS105 4.2 105.6 1.0
CA D:HIS77 4.4 99.3 1.0
C D:CYS104 4.5 107.9 1.0
CD A:PRO85 4.5 98.1 1.0
CA D:CYS104 4.6 107.9 1.0
CB D:GLU102 4.6 104.0 1.0
CA D:CYS105 4.7 105.6 1.0
CG A:PRO85 4.8 98.1 1.0
N A:CYS83 4.8 103.8 1.0
C A:CYS83 4.9 103.8 1.0
CB A:PRO85 5.0 98.1 1.0

Zinc binding site 5 out of 8 in 7phk

Go back to Zinc Binding Sites List in 7phk
Zinc binding site 5 out of 8 in the Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn603

b:30.0
occ:1.00
 ND1 E:HIS77 2.0 99.3 1.0
SG F:CYS83 2.3 103.8 1.0
SG E:CYS104 2.4 107.9 1.0
CB F:CYS83 2.5 103.8 1.0
SG E:CYS105 2.8 105.6 1.0
CE1 E:HIS77 2.8 99.3 1.0
CG E:HIS77 3.1 99.3 1.0
CB E:HIS77 3.6 99.3 1.0
CB E:CYS105 3.8 105.6 1.0
CB E:CYS104 3.8 107.9 1.0
NE2 E:HIS77 3.9 99.3 1.0
CA F:CYS83 4.0 103.8 1.0
CD2 E:HIS77 4.1 99.3 1.0
N E:CYS105 4.2 105.6 1.0
CA E:HIS77 4.3 99.3 1.0
C E:CYS104 4.5 107.9 1.0
CD F:PRO85 4.5 98.1 1.0
CA E:CYS105 4.7 105.6 1.0
CB E:GLU102 4.7 104.0 1.0
CA E:CYS104 4.7 107.9 1.0
CG F:PRO85 4.8 98.1 1.0
N F:CYS83 4.8 103.8 1.0
C F:CYS83 4.9 103.8 1.0
N E:CYS78 4.9 102.5 1.0
CB F:PRO85 5.0 98.1 1.0

Zinc binding site 6 out of 8 in 7phk

Go back to Zinc Binding Sites List in 7phk
Zinc binding site 6 out of 8 in the Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn603

b:30.0
occ:1.00
 ND1 G:HIS77 2.1 99.3 1.0
SG H:CYS83 2.3 103.8 1.0
SG G:CYS104 2.4 107.9 1.0
CB H:CYS83 2.5 103.8 1.0
SG G:CYS105 2.8 105.6 1.0
CE1 G:HIS77 2.9 99.3 1.0
CG G:HIS77 3.2 99.3 1.0
CB G:HIS77 3.7 99.3 1.0
CB G:CYS105 3.7 105.6 1.0
CB G:CYS104 3.8 107.9 1.0
NE2 G:HIS77 4.0 99.3 1.0
CA H:CYS83 4.0 103.8 1.0
N G:CYS105 4.2 105.6 1.0
CD2 G:HIS77 4.2 99.3 1.0
CA G:HIS77 4.4 99.3 1.0
C G:CYS104 4.4 107.9 1.0
CD H:PRO85 4.5 98.1 1.0
CA G:CYS105 4.6 105.6 1.0
CA G:CYS104 4.6 107.9 1.0
CB G:GLU102 4.7 104.0 1.0
CG H:PRO85 4.8 98.1 1.0
N H:CYS83 4.8 103.8 1.0
C H:CYS83 4.9 103.8 1.0
N G:CYS78 4.9 102.5 1.0
O G:CYS104 5.0 107.9 1.0
CB H:PRO85 5.0 98.1 1.0

Zinc binding site 7 out of 8 in 7phk

Go back to Zinc Binding Sites List in 7phk
Zinc binding site 7 out of 8 in the Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn601

b:30.0
occ:1.00
 ND1 F:HIS77 2.1 99.3 1.0
SG G:CYS83 2.3 103.8 1.0
SG F:CYS104 2.4 107.9 1.0
CB G:CYS83 2.5 103.8 1.0
SG F:CYS105 2.8 105.6 1.0
CE1 F:HIS77 2.8 99.3 1.0
CG F:HIS77 3.1 99.3 1.0
CB F:HIS77 3.6 99.3 1.0
CB F:CYS105 3.7 105.6 1.0
CB F:CYS104 3.8 107.9 1.0
NE2 F:HIS77 3.9 99.3 1.0
CA G:CYS83 4.0 103.8 1.0
CD2 F:HIS77 4.1 99.3 1.0
N F:CYS105 4.2 105.6 1.0
CA F:HIS77 4.3 99.3 1.0
C F:CYS104 4.4 107.9 1.0
CD G:PRO85 4.5 98.1 1.0
CA F:CYS105 4.6 105.6 1.0
CA F:CYS104 4.7 107.9 1.0
CB F:GLU102 4.7 104.0 1.0
CG G:PRO85 4.8 98.1 1.0
N G:CYS83 4.8 103.8 1.0
C G:CYS83 4.9 103.8 1.0
N F:CYS78 4.9 102.5 1.0
CB G:PRO85 5.0 98.1 1.0

Zinc binding site 8 out of 8 in 7phk

Go back to Zinc Binding Sites List in 7phk
Zinc binding site 8 out of 8 in the Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Human Voltage-Gated Potassium Channel KV3.1 in Dimeric State (with Zn) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn601

b:30.0
occ:1.00
 ND1 H:HIS77 2.1 99.3 1.0
SG E:CYS83 2.3 103.8 1.0
SG H:CYS104 2.3 107.9 1.0
CB E:CYS83 2.5 103.8 1.0
CE1 H:HIS77 2.8 99.3 1.0
SG H:CYS105 2.9 105.6 1.0
CG H:HIS77 3.1 99.3 1.0
CB H:HIS77 3.7 99.3 1.0
CB H:CYS104 3.8 107.9 1.0
CB H:CYS105 3.8 105.6 1.0
NE2 H:HIS77 3.9 99.3 1.0
CA E:CYS83 4.0 103.8 1.0
CD2 H:HIS77 4.1 99.3 1.0
N H:CYS105 4.2 105.6 1.0
CA H:HIS77 4.4 99.3 1.0
C H:CYS104 4.5 107.9 1.0
CD E:PRO85 4.5 98.1 1.0
CA H:CYS104 4.7 107.9 1.0
CA H:CYS105 4.7 105.6 1.0
CB H:GLU102 4.7 104.0 1.0
CG E:PRO85 4.8 98.1 1.0
N E:CYS83 4.8 103.8 1.0
C E:CYS83 4.9 103.8 1.0
CB E:PRO85 5.0 98.1 1.0

Reference:

G.Chi, Q.Liang, A.Sridhar, J.B.Cowgill, K.Sader, M.Radjainia, P.Qian, P.Castro-Hartmann, S.Venkaya, N.K.Singh, G.Mckinley, A.Fernandez-Cid, S.M.M.Mukhopadhyay, N.A.Burgess-Brown, L.Delemotte, M.Covarrubias, K.L.Durr. Cryo-Em Structure of the Human KV3.1 Channel Reveals Gating Control By the Cytoplasmic T1 Domain. Nat Commun V. 13 4087 2022.
ISSN: ESSN 2041-1723
PubMed: 35840580
DOI: 10.1038/S41467-022-29594-W
Page generated: Sat Apr 8 01:26:46 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy