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Zinc in PDB 7pcv: Crystal Structure of RBM5 RRM1-Zinc Finger

Protein crystallography data

The structure of Crystal Structure of RBM5 RRM1-Zinc Finger, PDB code: 7pcv was solved by K.Soni, P.K.A.Jagtap, M.Sattler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.22 / 2.42
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 60.38, 39.88, 96.85, 90, 96.03, 90
R / Rfree (%) 25.8 / 31.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of RBM5 RRM1-Zinc Finger (pdb code 7pcv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of RBM5 RRM1-Zinc Finger, PDB code: 7pcv:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7pcv

Go back to Zinc Binding Sites List in 7pcv
Zinc binding site 1 out of 2 in the Crystal Structure of RBM5 RRM1-Zinc Finger


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of RBM5 RRM1-Zinc Finger within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:43.1
occ:1.00
SG A:CYS110 2.3 43.3 1.0
SG A:CYS99 2.3 46.5 1.0
SG A:CYS113 2.3 49.7 1.0
SG A:CYS96 2.3 46.5 1.0
CB A:CYS96 3.1 26.7 1.0
CB A:CYS99 3.2 40.4 1.0
CB A:CYS110 3.3 35.6 1.0
N A:CYS99 3.7 45.0 1.0
CB A:CYS113 3.7 40.5 1.0
N A:CYS113 3.8 37.7 1.0
CA A:CYS99 4.0 47.4 1.0
CA A:CYS113 4.3 33.6 1.0
CB A:ARG112 4.5 44.3 1.0
CA A:CYS96 4.6 41.2 1.0
CB A:ALA115 4.6 26.1 1.0
C A:CYS99 4.6 45.2 1.0
C A:LYS98 4.7 35.8 1.0
CA A:CYS110 4.7 38.6 1.0
CB A:LYS98 4.7 43.4 1.0
N A:ALA115 4.7 34.1 1.0
N A:GLY114 4.7 37.1 1.0
C A:CYS113 4.8 40.2 1.0
N A:CYS100 4.8 50.0 1.0
N A:ARG112 4.9 48.0 1.0
C A:ARG112 4.9 52.6 1.0
CB A:LEU101 4.9 42.5 1.0
N A:LEU101 5.0 43.7 1.0
N A:LYS98 5.0 42.5 1.0
CA A:ARG112 5.0 45.1 1.0

Zinc binding site 2 out of 2 in 7pcv

Go back to Zinc Binding Sites List in 7pcv
Zinc binding site 2 out of 2 in the Crystal Structure of RBM5 RRM1-Zinc Finger


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of RBM5 RRM1-Zinc Finger within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:50.6
occ:1.00
SG B:CYS113 2.3 47.2 1.0
SG B:CYS110 2.3 51.4 1.0
SG B:CYS96 2.3 43.9 1.0
SG B:CYS99 2.3 39.0 1.0
CB B:CYS96 3.0 36.8 1.0
CB B:CYS110 3.1 45.5 1.0
CB B:CYS99 3.3 38.8 1.0
CB B:CYS113 3.6 62.2 1.0
N B:CYS99 3.8 39.8 1.0
N B:CYS113 3.8 40.5 1.0
CA B:CYS99 4.0 46.4 1.0
CA B:CYS113 4.2 38.9 1.0
CA B:CYS96 4.5 49.9 1.0
C B:CYS99 4.6 49.7 1.0
CA B:CYS110 4.6 44.3 1.0
CB B:ALA115 4.6 35.5 1.0
CB B:LEU101 4.6 51.4 1.0
CB B:ARG112 4.6 47.4 1.0
N B:GLY114 4.7 41.4 1.0
C B:LYS98 4.7 42.7 1.0
CB B:LYS98 4.7 36.5 1.0
N B:CYS100 4.7 62.2 1.0
C B:CYS113 4.8 41.3 1.0
N B:ALA115 4.8 41.3 1.0
N B:LEU101 4.8 45.8 1.0
C B:ARG112 4.9 47.4 1.0
N B:ARG112 4.9 44.0 1.0
N B:LYS98 4.9 45.5 1.0

Reference:

K.Soni, P.K.A.Jagtap, M.Sattler. Crystal Structure of RBM5 RRM1-Zinc Finger To Be Published.
Page generated: Sat Apr 8 01:18:38 2023

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