Zinc in PDB 7p8k: Crystal Structure of in Planta Processed AVRRPS4 in Complex with the Wrky Domain of RRS1

Protein crystallography data

The structure of Crystal Structure of in Planta Processed AVRRPS4 in Complex with the Wrky Domain of RRS1, PDB code: 7p8k was solved by N.Mukhi, H.Brown, D.Gorenkin, P.Ding, A.R.Bentham, J.D.G.Jones, M.J.Banfield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.77 / 2.65
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 105.607, 105.607, 66.987, 90, 90, 120
R / Rfree (%) 24.5 / 28.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of in Planta Processed AVRRPS4 in Complex with the Wrky Domain of RRS1 (pdb code 7p8k). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of in Planta Processed AVRRPS4 in Complex with the Wrky Domain of RRS1, PDB code: 7p8k:

Zinc binding site 1 out of 1 in 7p8k

Go back to Zinc Binding Sites List in 7p8k
Zinc binding site 1 out of 1 in the Crystal Structure of in Planta Processed AVRRPS4 in Complex with the Wrky Domain of RRS1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of in Planta Processed AVRRPS4 in Complex with the Wrky Domain of RRS1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1301

b:90.9
occ:1.00
ND1 B:HIS1267 1.8 97.7 1.0
NE2 B:HIS1269 2.1 98.5 1.0
SG B:CYS1235 2.2 90.3 1.0
SG B:CYS1243 2.3 89.8 1.0
CE1 B:HIS1269 2.6 99.3 1.0
CE1 B:HIS1267 2.7 96.0 1.0
CG B:HIS1267 2.9 98.8 1.0
CB B:CYS1235 3.0 88.9 1.0
CD2 B:HIS1269 3.3 99.8 1.0
CB B:HIS1267 3.3 101.9 1.0
CB B:CYS1243 3.4 93.2 1.0
ND1 B:HIS1269 3.8 103.0 1.0
NE2 B:HIS1267 3.8 93.9 1.0
CD2 B:HIS1267 3.9 95.4 1.0
CA B:HIS1267 4.0 100.9 1.0
CG B:HIS1269 4.1 104.1 1.0
CB B:ALA1245 4.3 86.4 1.0
CA B:CYS1235 4.4 89.0 1.0
CE3 B:TRP1213 4.6 100.8 1.0
CB B:TYR1237 4.6 111.8 1.0
CD2 B:TYR1237 4.7 115.3 1.0
CZ3 B:TRP1213 4.7 101.8 1.0
N B:ASN1268 4.8 98.7 1.0
CA B:CYS1243 4.8 95.4 1.0
OD1 B:ASN1268 4.9 99.8 1.0
C B:HIS1267 4.9 100.7 1.0

Reference:

N.Mukhi, H.Brown, D.Gorenkin, P.Ding, A.R.Bentham, J.D.G.Jones, M.J.Banfield. Perception of Structurally Distinct Effectors By the Integrated Wrky Domain of A Plant Immune Receptor To Be Published.
Page generated: Sun Aug 22 09:53:32 2021

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