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Zinc in PDB 7oxn: Crystal Structure of TAP01 in Complex with Cyclised Amyloid Beta Peptide

Protein crystallography data

The structure of Crystal Structure of TAP01 in Complex with Cyclised Amyloid Beta Peptide, PDB code: 7oxn was solved by G.Hall, R.Cowan, M.D.Carr, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.26 / 2.50
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 80.831, 47.494, 124.427, 90, 90.96, 90
R / Rfree (%) 22.8 / 26.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of TAP01 in Complex with Cyclised Amyloid Beta Peptide (pdb code 7oxn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of TAP01 in Complex with Cyclised Amyloid Beta Peptide, PDB code: 7oxn:

Zinc binding site 1 out of 1 in 7oxn

Go back to Zinc Binding Sites List in 7oxn
Zinc binding site 1 out of 1 in the Crystal Structure of TAP01 in Complex with Cyclised Amyloid Beta Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of TAP01 in Complex with Cyclised Amyloid Beta Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:49.1
occ:1.00
HD1 A:HIS14 1.2 30.0 0.0
OE2 A:GLU11 2.0 53.4 1.0
ND1 A:HIS14 2.0 52.4 1.0
CD A:GLU11 2.7 53.5 1.0
OE1 A:GLU11 2.8 53.5 1.0
CE1 A:HIS14 2.9 49.8 1.0
HE1 A:HIS14 3.0 49.0 1.0
CG A:HIS14 3.1 54.0 1.0
HB2 A:HIS14 3.2 57.9 1.0
HA A:HIS14 3.5 55.4 1.0
CB A:HIS14 3.6 57.0 1.0
O K:HOH361 3.6 53.0 1.0
NE2 A:HIS14 4.0 50.0 1.0
CA A:HIS14 4.1 56.8 1.0
CD2 A:HIS14 4.2 52.3 1.0
CG A:GLU11 4.2 54.1 1.0
HB2 A:GLU11 4.4 57.8 1.0
HB3 A:HIS14 4.5 58.8 1.0
HB3 A:GLU11 4.6 57.0 1.0
CB A:GLU11 4.7 56.7 1.0
HG3 A:GLU11 4.7 54.0 1.0
HG2 A:GLU11 4.7 53.2 1.0
HE2 A:HIS14 4.8 30.0 0.0
O K:HOH328 4.9 52.3 1.0
HD11 K:LEU94 5.0 47.6 1.0
N A:HIS14 5.0 59.8 1.0

Reference:

P.Bakrania, G.Hall, Y.Bouter, C.Bouter, N.Beindorff, R.Cowan, S.Davies, J.Price, C.Mpamhanga, E.Love, D.Matthews, M.D.Carr, T.A.Bayer. Discovery of A Novel Pseudo Beta-Hairpin Structure of N-Truncated Amyloid-Beta For Use As A Vaccine Against Alzheimer'S Disease. Mol Psychiatry V. 27 840 2022.
ISSN: ISSN 1476-5578
PubMed: 34776512
DOI: 10.1038/S41380-021-01385-7
Page generated: Sat Apr 8 01:13:20 2023

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