Zinc in PDB 7ooc: Mycoplasma Pneumoniae 30S Subunit of Ribosomes in Chloramphenicol- Treated Cells

The binding sites of Zinc atom in the Mycoplasma Pneumoniae 30S Subunit of Ribosomes in Chloramphenicol- Treated Cells (pdb code 7ooc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Mycoplasma Pneumoniae 30S Subunit of Ribosomes in Chloramphenicol- Treated Cells, PDB code: 7ooc:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Mycoplasma Pneumoniae 30S Subunit of Ribosomes in Chloramphenicol- Treated Cells


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mycoplasma Pneumoniae 30S Subunit of Ribosomes in Chloramphenicol- Treated Cells within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn101 b:86.1 occ:1.00 SG M:CYS27 2.3 68.4 1.0 SG M:CYS43 2.3 63.0 1.0 SG M:CYS40 2.3 62.3 1.0 SG M:CYS24 2.3 65.9 1.0 CB M:CYS27 3.3 68.4 1.0 CB M:CYS24 3.4 65.9 1.0 CB M:CYS43 3.4 63.0 1.0 CB M:CYS40 3.5 62.3 1.0 N M:CYS27 3.7 68.4 1.0 N M:CYS40 3.9 62.3 1.0 CA M:CYS27 4.0 68.4 1.0 O M:CYS27 4.0 68.4 1.0 CA M:CYS40 4.4 62.3 1.0 C M:CYS27 4.4 68.4 1.0 C M:ARG26 4.6 68.1 1.0 NH1 M:ARG26 4.7 68.1 1.0 CA M:CYS43 4.8 63.0 1.0 CB M:ARG26 4.8 68.1 1.0 CA M:CYS24 4.8 65.9 1.0 N M:ARG26 4.8 68.1 1.0 CG1 M:VAL39 4.9 61.7 1.0 N M:CYS43 4.9 63.0 1.0 CA M:ARG26 5.0 68.1 1.0 C M:VAL39 5.0 61.7 1.0

Zinc binding site 2 out of 2 in the Mycoplasma Pneumoniae 30S Subunit of Ribosomes in Chloramphenicol- Treated Cells


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Mycoplasma Pneumoniae 30S Subunit of Ribosomes in Chloramphenicol- Treated Cells within 5.0Å range: probe atom residue distance (Å) B Occ Q:Zn201 b:112.7 occ:1.00 ND1 Q:HIS82 2.0 80.8 1.0 SG Q:CYS44 2.3 92.7 1.0 SG Q:CYS79 2.3 83.8 1.0 SG Q:CYS41 2.3 89.4 1.0 CG Q:HIS82 3.0 80.8 1.0 CE1 Q:HIS82 3.1 80.8 1.0 CB Q:CYS79 3.1 83.8 1.0 CB Q:HIS82 3.2 80.8 1.0 CB Q:CYS44 3.6 92.7 1.0 CB Q:CYS41 3.6 89.4 1.0 N Q:CYS79 3.8 83.8 1.0 N Q:CYS44 3.9 92.7 1.0 CA Q:CYS79 4.0 83.8 1.0 CD2 Q:HIS82 4.1 80.8 1.0 NE2 Q:HIS82 4.2 80.8 1.0 N Q:HIS82 4.2 80.8 1.0 CA Q:CYS44 4.3 92.7 1.0 CA Q:HIS82 4.3 80.8 1.0 CB Q:PHE43 4.6 89.9 1.0 C Q:CYS79 4.7 83.8 1.0 O Q:CYS41 4.8 89.4 1.0 O Q:CYS79 4.8 83.8 1.0 C Q:PHE43 4.9 89.9 1.0 CA Q:CYS41 4.9 89.4 1.0 C Q:ASN78 4.9 81.7 1.0

L.Xue, S.Lenz, M.Zimmermann-Kogadeeva, D.Tegunov, P.Cramer, P.Bork, J.Rappsilber, J.Mahamid. Visualizing Translation Dynamics at Atomic Detail Inside A Bacterial Cell. Nature V. 610 205 2022.
ISSN: ESSN 1476-4687
PubMed: 36171285
DOI: 10.1038/S41586-022-05255-2