Zinc in PDB 7ooc: Mycoplasma Pneumoniae 30S Subunit of Ribosomes in Chloramphenicol- Treated Cells

Zinc Binding Sites:

The binding sites of Zinc atom in the Mycoplasma Pneumoniae 30S Subunit of Ribosomes in Chloramphenicol- Treated Cells (pdb code 7ooc). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Mycoplasma Pneumoniae 30S Subunit of Ribosomes in Chloramphenicol- Treated Cells, PDB code: 7ooc:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7ooc

Go back to Zinc Binding Sites List in 7ooc
Zinc binding site 1 out of 2 in the Mycoplasma Pneumoniae 30S Subunit of Ribosomes in Chloramphenicol- Treated Cells


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Mycoplasma Pneumoniae 30S Subunit of Ribosomes in Chloramphenicol- Treated Cells within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn101

b:86.1
occ:1.00
SG M:CYS27 2.3 68.4 1.0
SG M:CYS43 2.3 63.0 1.0
SG M:CYS40 2.3 62.3 1.0
SG M:CYS24 2.3 65.9 1.0
CB M:CYS27 3.3 68.4 1.0
CB M:CYS24 3.4 65.9 1.0
CB M:CYS43 3.4 63.0 1.0
CB M:CYS40 3.5 62.3 1.0
N M:CYS27 3.7 68.4 1.0
N M:CYS40 3.9 62.3 1.0
CA M:CYS27 4.0 68.4 1.0
O M:CYS27 4.0 68.4 1.0
CA M:CYS40 4.4 62.3 1.0
C M:CYS27 4.4 68.4 1.0
C M:ARG26 4.6 68.1 1.0
NH1 M:ARG26 4.7 68.1 1.0
CA M:CYS43 4.8 63.0 1.0
CB M:ARG26 4.8 68.1 1.0
CA M:CYS24 4.8 65.9 1.0
N M:ARG26 4.8 68.1 1.0
CG1 M:VAL39 4.9 61.7 1.0
N M:CYS43 4.9 63.0 1.0
CA M:ARG26 5.0 68.1 1.0
C M:VAL39 5.0 61.7 1.0

Zinc binding site 2 out of 2 in 7ooc

Go back to Zinc Binding Sites List in 7ooc
Zinc binding site 2 out of 2 in the Mycoplasma Pneumoniae 30S Subunit of Ribosomes in Chloramphenicol- Treated Cells


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Mycoplasma Pneumoniae 30S Subunit of Ribosomes in Chloramphenicol- Treated Cells within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Zn201

b:112.7
occ:1.00
ND1 Q:HIS82 2.0 80.8 1.0
SG Q:CYS44 2.3 92.7 1.0
SG Q:CYS79 2.3 83.8 1.0
SG Q:CYS41 2.3 89.4 1.0
CG Q:HIS82 3.0 80.8 1.0
CE1 Q:HIS82 3.1 80.8 1.0
CB Q:CYS79 3.1 83.8 1.0
CB Q:HIS82 3.2 80.8 1.0
CB Q:CYS44 3.6 92.7 1.0
CB Q:CYS41 3.6 89.4 1.0
N Q:CYS79 3.8 83.8 1.0
N Q:CYS44 3.9 92.7 1.0
CA Q:CYS79 4.0 83.8 1.0
CD2 Q:HIS82 4.1 80.8 1.0
NE2 Q:HIS82 4.2 80.8 1.0
N Q:HIS82 4.2 80.8 1.0
CA Q:CYS44 4.3 92.7 1.0
CA Q:HIS82 4.3 80.8 1.0
CB Q:PHE43 4.6 89.9 1.0
C Q:CYS79 4.7 83.8 1.0
O Q:CYS41 4.8 89.4 1.0
O Q:CYS79 4.8 83.8 1.0
C Q:PHE43 4.9 89.9 1.0
CA Q:CYS41 4.9 89.4 1.0
C Q:ASN78 4.9 81.7 1.0

Reference:

L.Xue, S.Lenz, M.Zimmermann-Kogadeeva, D.Tegunov, P.Cramer, P.Bork, J.Rappsilber, J.Mahamid. Visualizing Translation Dynamics at Atomic Detail Inside A Bacterial Cell. Nature V. 610 205 2022.
ISSN: ESSN 1476-4687
PubMed: 36171285
DOI: 10.1038/S41586-022-05255-2
Page generated: Wed Oct 30 08:38:40 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy