Zinc in PDB 7ogp: Structure of the Apo-State of the Bacteriophage Phikz Non-Virion Rna Polymerase - Class Including Clamp

Enzymatic activity of Structure of the Apo-State of the Bacteriophage Phikz Non-Virion Rna Polymerase - Class Including Clamp

All present enzymatic activity of Structure of the Apo-State of the Bacteriophage Phikz Non-Virion Rna Polymerase - Class Including Clamp:
2.7.7.6;

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Apo-State of the Bacteriophage Phikz Non-Virion Rna Polymerase - Class Including Clamp (pdb code 7ogp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Apo-State of the Bacteriophage Phikz Non-Virion Rna Polymerase - Class Including Clamp, PDB code: 7ogp:

Zinc binding site 1 out of 1 in 7ogp

Go back to Zinc Binding Sites List in 7ogp
Zinc binding site 1 out of 1 in the Structure of the Apo-State of the Bacteriophage Phikz Non-Virion Rna Polymerase - Class Including Clamp


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Apo-State of the Bacteriophage Phikz Non-Virion Rna Polymerase - Class Including Clamp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn701

b:129.2
occ:1.00
SG D:CYS341 2.3 113.0 1.0
SG D:CYS350 2.3 107.8 1.0
SG D:CYS353 2.3 104.4 1.0
SG D:CYS288 2.3 114.8 1.0
CB D:CYS341 3.3 113.0 1.0
CB D:CYS350 3.4 107.8 1.0
CB D:CYS288 3.4 114.8 1.0
CB D:CYS353 3.4 104.4 1.0
N D:CYS350 3.8 107.8 1.0
CA D:CYS350 4.2 107.8 1.0
CA D:CYS341 4.6 113.0 1.0
CA D:CYS288 4.6 114.8 1.0
CA D:CYS353 4.6 104.4 1.0
N D:CYS288 4.7 114.8 1.0
N D:CYS353 4.7 104.4 1.0
C D:CYS341 4.7 113.0 1.0
C D:ILE349 4.8 104.0 1.0
N D:ASN342 4.9 111.8 1.0
C D:CYS350 4.9 107.8 1.0
CA D:ILE349 5.0 104.0 1.0
NH2 D:ARG336 5.0 106.6 1.0

Reference:

N.Deymartin Garrido, M.Orekhova, Y.T.E.Lai Wan Loong, A.Litvinova, K.Ramlaul, T.Artamonova, A.S.Melnikov, P.Serdobintsev, C.H.S.Aylett, M.Yakunina. Structure of the Bacteriophage Phikz Non-Virion Rna Polymerase. Nucleic Acids Res. 2021.
ISSN: ESSN 1362-4962
PubMed: 34181731
DOI: 10.1093/NAR/GKAB539
Page generated: Mon Jul 12 17:42:02 2021

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