Zinc in PDB 7oft: Structure of Sars-Cov-2 Papain-Like Protease Plpro in Complex with P- Hydroxybenzaldehyde

Enzymatic activity of Structure of Sars-Cov-2 Papain-Like Protease Plpro in Complex with P- Hydroxybenzaldehyde

All present enzymatic activity of Structure of Sars-Cov-2 Papain-Like Protease Plpro in Complex with P- Hydroxybenzaldehyde:
3.4.19.12;

Protein crystallography data

The structure of Structure of Sars-Cov-2 Papain-Like Protease Plpro in Complex with P- Hydroxybenzaldehyde, PDB code: 7oft was solved by V.Srinivasan, N.Werner, S.Falke, S.Guenther, P.Reinke, H.Brognaro, N.Ullah, H.Andaleeb, M.Perbandt, B.Alves Franca, M.Schwinzer, M.Wang, W.Ewert, J.Sprenger, J.Lieske, F.Koua, H.Ginn, T.J.Lane, M.Wolf, O.Yefanov, L.Gelisio, S.Saouane, A.Tolstikova, M.Groessler, H.Fleckenstein, F.Trost, K.Lorenzen, R.Schubert, H.Han, C.Schmidt, L.Brings, M.Galchenkova, Y.Gevorkov, C.Li, A.Perk, S.Awel, A.Wahab, I.Choudary, D.Turk, W.Hinrichs, H.N.Chapman, A.Meents, C.Betzel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.79 / 1.95
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 81.613, 81.613, 134.378, 90, 90, 120
R / Rfree (%) 18.3 / 21.4

Other elements in 7oft:

The structure of Structure of Sars-Cov-2 Papain-Like Protease Plpro in Complex with P- Hydroxybenzaldehyde also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Sars-Cov-2 Papain-Like Protease Plpro in Complex with P- Hydroxybenzaldehyde (pdb code 7oft). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Sars-Cov-2 Papain-Like Protease Plpro in Complex with P- Hydroxybenzaldehyde, PDB code: 7oft:

Zinc binding site 1 out of 1 in 7oft

Go back to Zinc Binding Sites List in 7oft
Zinc binding site 1 out of 1 in the Structure of Sars-Cov-2 Papain-Like Protease Plpro in Complex with P- Hydroxybenzaldehyde


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Sars-Cov-2 Papain-Like Protease Plpro in Complex with P- Hydroxybenzaldehyde within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:75.2
occ:1.00
SG A:CYS224 2.2 79.2 1.0
SG A:CYS226 2.4 75.1 1.0
SG A:CYS189 2.4 75.6 1.0
SG A:CYS192 2.6 83.3 1.0
CB A:CYS224 3.2 77.2 1.0
CB A:CYS192 3.3 79.8 1.0
CB A:CYS226 3.3 78.9 1.0
CB A:CYS189 3.4 74.3 1.0
N A:CYS192 3.8 78.6 1.0
N A:CYS226 4.1 76.0 1.0
CA A:CYS192 4.2 81.8 1.0
CB A:THR191 4.3 77.8 1.0
CA A:CYS226 4.3 76.4 1.0
O A:HOH766 4.5 71.6 1.0
CA A:CYS224 4.6 72.5 1.0
CG2 A:THR191 4.7 77.0 1.0
C A:THR191 4.7 81.1 1.0
CA A:CYS189 4.9 73.9 1.0
C A:CYS224 4.9 80.2 1.0
CA A:THR191 4.9 78.6 1.0
N A:THR225 4.9 82.5 1.0
N A:THR191 4.9 70.8 1.0

Reference:

V.Srinivasan, N.Werner, S.Falke, S.Guenther, P.Reinke, W.Ewert, J.Sprenger, F.Koua, H.Brognaro, N.Ullah, H.Andaleeb, M.Perbandt, B.Alves Franca, M.Schwinzer, M.Wang, J.Lieske, H.Ginn, T.J.Lane, O.Yefanov, L.Gelisio, J.Hakanpaeae, S.Saouane, A.Tolstikova, M.Groessler, H.Fleckenstein, F.Trost, M.Wolf, K.Lorenzen, R.Schubert, H.Han, C.Schmidt, L.Brings, M.Galchenkova, Y.Gevorkov, C.Li, A.Perk, S.Awel, A.Wahab, I.Choudary, D.Turk, W.Hinrichs, H.N.Chapman, A.Meents, C.Betzel. Sars-Cov-2 Papain-Like Protease Plpro in Complex with Inhibitors To Be Published.
Page generated: Mon Jul 12 17:41:46 2021

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