Zinc in PDB 7odu: Natural Killer Cell Receptor Nkr-P1B From Rattus Norvegicus in Complex with Its Cognate Ligand Clr-11

Protein crystallography data

The structure of Natural Killer Cell Receptor Nkr-P1B From Rattus Norvegicus in Complex with Its Cognate Ligand Clr-11, PDB code: 7odu was solved by T.Skalova, J.Blaha, B.Kalouskova, O.Skorepa, O.Vanek, J.Dohnalek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.77 / 3.00
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 111.593, 111.593, 110.107, 90, 90, 120
R / Rfree (%) 20.8 / 25.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Natural Killer Cell Receptor Nkr-P1B From Rattus Norvegicus in Complex with Its Cognate Ligand Clr-11 (pdb code 7odu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Natural Killer Cell Receptor Nkr-P1B From Rattus Norvegicus in Complex with Its Cognate Ligand Clr-11, PDB code: 7odu:

Zinc binding site 1 out of 1 in 7odu

Go back to Zinc Binding Sites List in 7odu
Zinc binding site 1 out of 1 in the Natural Killer Cell Receptor Nkr-P1B From Rattus Norvegicus in Complex with Its Cognate Ligand Clr-11


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Natural Killer Cell Receptor Nkr-P1B From Rattus Norvegicus in Complex with Its Cognate Ligand Clr-11 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:106.5
occ:1.00
ND1 A:HIS200 1.9 107.2 1.0
NE2 A:HIS198 2.3 115.8 1.0
OE2 A:GLU112 2.4 85.5 1.0
CE1 A:HIS200 2.6 112.2 1.0
OE1 A:GLU112 2.8 111.5 1.0
CD A:GLU112 2.9 110.2 1.0
CE1 A:HIS198 2.9 122.0 1.0
CG A:HIS200 3.1 107.0 1.0
CD2 A:HIS198 3.5 116.8 1.0
CB A:HIS200 3.7 115.4 1.0
NE2 A:HIS200 3.8 116.6 1.0
CD2 A:HIS200 4.1 108.2 1.0
ND1 A:HIS198 4.2 123.7 1.0
CA A:HIS200 4.2 124.2 1.0
CG A:GLU112 4.4 111.6 1.0
CG A:HIS198 4.4 117.1 1.0
CB A:GLU112 4.9 102.8 1.0

Reference:

T.Skalova, O.Vanek, B.Kalouskova, O.Skorepa, J.Blaha, K.Harlos, J.Dohnalek. Natural Killer Cell Receptor Nkr-P1B From Rattus Norvegicus in Complex with Its Cognate Ligand Clr-11 To Be Published.
Page generated: Wed Oct 30 08:27:49 2024

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