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Zinc in PDB 7nz7: Crystal Structure of Mouse ADAT2/ADAT3 Trna Deamination Complex 1

Enzymatic activity of Crystal Structure of Mouse ADAT2/ADAT3 Trna Deamination Complex 1

All present enzymatic activity of Crystal Structure of Mouse ADAT2/ADAT3 Trna Deamination Complex 1:
3.5.4.33;

Protein crystallography data

The structure of Crystal Structure of Mouse ADAT2/ADAT3 Trna Deamination Complex 1, PDB code: 7nz7 was solved by E.Ramos Morales, C.Romier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.94 / 2.96
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 105.471, 105.471, 187.076, 90, 90, 120
R / Rfree (%) 19.5 / 23.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Mouse ADAT2/ADAT3 Trna Deamination Complex 1 (pdb code 7nz7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Mouse ADAT2/ADAT3 Trna Deamination Complex 1, PDB code: 7nz7:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7nz7

Go back to Zinc Binding Sites List in 7nz7
Zinc binding site 1 out of 2 in the Crystal Structure of Mouse ADAT2/ADAT3 Trna Deamination Complex 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Mouse ADAT2/ADAT3 Trna Deamination Complex 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn200

b:100.9
occ:1.00
SG A:CYS110 2.2 94.7 1.0
ND1 A:HIS71 2.3 96.1 1.0
SG A:CYS107 2.3 99.2 1.0
CE1 A:HIS71 3.0 100.7 1.0
CG A:HIS71 3.0 103.7 1.0
OE2 A:GLU73 3.1 107.0 1.0
CB A:CYS107 3.2 90.7 1.0
O A:HOH301 3.4 102.7 1.0
CB A:HIS71 3.5 104.9 1.0
N A:CYS107 3.5 97.8 1.0
OE1 A:GLU73 3.5 108.5 1.0
CB A:CYS110 3.6 87.5 1.0
CD A:GLU73 3.6 104.8 1.0
NE2 A:HIS71 3.9 101.4 1.0
CA A:CYS107 3.9 98.6 1.0
CD2 A:HIS71 3.9 96.7 1.0
N A:CYS110 4.4 98.9 1.0
CA A:CYS110 4.6 90.7 1.0
C A:PRO106 4.7 96.6 1.0
C A:CYS107 4.8 100.6 1.0
CA A:PRO106 4.9 104.6 1.0
CA A:HIS71 4.9 103.0 1.0
CG A:GLU73 5.0 96.9 1.0

Zinc binding site 2 out of 2 in 7nz7

Go back to Zinc Binding Sites List in 7nz7
Zinc binding site 2 out of 2 in the Crystal Structure of Mouse ADAT2/ADAT3 Trna Deamination Complex 1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Mouse ADAT2/ADAT3 Trna Deamination Complex 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn400

b:104.4
occ:1.00
OD1 B:ASP348 2.0 110.4 1.0
SG B:CYS292 2.2 92.3 1.0
ND1 B:HIS223 2.2 96.7 1.0
SG B:CYS289 2.3 97.6 1.0
CG B:ASP348 2.7 105.9 1.0
OD2 B:ASP348 2.7 100.3 1.0
CG B:HIS223 3.1 102.0 1.0
CE1 B:HIS223 3.2 104.5 1.0
CB B:CYS289 3.3 106.2 1.0
CB B:HIS223 3.4 99.5 1.0
CB B:CYS292 3.4 102.0 1.0
N B:CYS289 3.8 103.9 1.0
N B:CYS292 4.0 99.3 1.0
CB B:ASP348 4.1 104.4 1.0
CA B:CYS289 4.1 105.1 1.0
CD2 B:HIS223 4.3 106.8 1.0
CA B:CYS292 4.3 99.0 1.0
NE2 B:HIS223 4.3 109.8 1.0
CB B:PRO349 4.7 108.9 1.0
C B:CYS289 4.7 97.4 1.0
CA B:PRO349 4.8 113.5 1.0
CA B:ASP348 4.9 105.0 1.0
CA B:HIS223 4.9 101.7 1.0
CB B:MET291 4.9 97.4 1.0
C B:PRO288 5.0 104.0 1.0
N B:PRO349 5.0 109.4 1.0

Reference:

E.Ramos Morales, C.Romier. The Structure of the Mouse ADAT2/ADAT3 Complex Reveals the Molecular Basis For Mammalian Trna Wobble Adenosine to Inosine Deamination To Be Published.
Page generated: Wed Oct 30 08:04:30 2024

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