Zinc in PDB 8dvs: Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp)

All present enzymatic activity of Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp):
3.6.4.13;

The structure of Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp) also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp) (pdb code 8dvs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp), PDB code: 8dvs:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Rig-I Bound to the End of OHSLR30 (+Atp) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1001 b:42.4 occ:1.00 SG A:CYS869 2.5 33.8 1.0 SG A:CYS810 2.5 21.8 1.0 SG A:CYS864 2.6 25.6 1.0 CB A:CYS813 2.7 30.3 1.0 CB A:CYS810 3.2 21.8 1.0 CB A:CYS869 3.5 33.8 1.0 N A:CYS813 3.6 30.3 1.0 CB A:CYS864 3.6 25.6 1.0 CA A:CYS813 3.7 30.3 1.0 CG A:ARG866 4.0 37.6 1.0 SG A:CYS813 4.1 30.3 1.0 CB A:ARG866 4.4 37.6 1.0 C A:CYS813 4.5 30.3 1.0 CZ2 A:TRP873 4.6 21.4 1.0 C A:LYS812 4.7 25.0 1.0 CA A:CYS810 4.7 21.8 1.0 CB A:ALA815 4.7 26.4 1.0 N A:LYS814 4.8 27.1 1.0 NE1 A:TRP873 4.8 21.4 1.0 CB A:HIS871 4.9 23.8 1.0 CB A:LYS812 4.9 25.0 1.0 CA A:CYS869 5.0 33.8 1.0 N A:ALA815 5.0 26.4 1.0

W.Wang, A.M.Pyle. The Rig-I Receptor Adopts Two Different Conformations For Distinguishing Host From Viral Rna Ligands. Mol.Cell V. 82 4131 2022.
ISSN: ISSN 1097-2765
PubMed: 36272408
DOI: 10.1016/J.MOLCEL.2022.09.029