Zinc in PDB 7nty: Crystal Structure of Neisseria Gonorrhoeae Leurs L550A Mutant

All present enzymatic activity of Crystal Structure of Neisseria Gonorrhoeae Leurs L550A Mutant:
6.1.1.4;

The structure of Crystal Structure of Neisseria Gonorrhoeae Leurs L550A Mutant, PDB code: 7nty was solved by L.Pang, S.V.Strelkov, S.D.Weeks, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.74 / 2.39
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	49.072, 81.68, 226.968, 90, 90, 90
R / Rfree (%)	19.6 / 24.9

The structure of Crystal Structure of Neisseria Gonorrhoeae Leurs L550A Mutant also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Zinc atom in the Crystal Structure of Neisseria Gonorrhoeae Leurs L550A Mutant (pdb code 7nty). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Neisseria Gonorrhoeae Leurs L550A Mutant, PDB code: 7nty:

Zinc binding site 1 out of 1 in the Crystal Structure of Neisseria Gonorrhoeae Leurs L550A Mutant


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Neisseria Gonorrhoeae Leurs L550A Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn901 b:113.5 occ:1.00 SG A:CYS493 2.2 69.7 1.0 SG A:CYS449 2.4 66.2 1.0 SG A:CYS452 2.4 55.5 1.0 SG A:CYS490 2.4 63.0 1.0 CB A:CYS490 3.0 44.3 1.0 CB A:CYS452 3.4 50.6 1.0 CB A:CYS493 3.4 48.0 1.0 CB A:CYS449 3.4 51.7 1.0 N A:CYS493 3.8 46.0 1.0 N A:CYS452 3.8 54.0 1.0 CA A:CYS493 4.1 55.6 1.0 CA A:CYS452 4.2 51.6 1.0 CB A:LYS451 4.3 69.2 1.0 CA A:CYS490 4.5 52.2 1.0 CB A:CYS492 4.6 56.6 1.0 C A:CYS492 4.7 55.3 1.0 C A:LYS451 4.8 67.3 1.0 C A:CYS493 4.8 53.2 1.0 CA A:CYS449 4.9 50.3 1.0 N A:GLY494 4.9 49.5 1.0 N A:CYS492 4.9 49.5 1.0 CA A:LYS451 4.9 67.9 1.0 CA A:CYS492 5.0 51.4 1.0 N A:LYS451 5.0 71.3 1.0

L.Pang, V.Zanki, S.V.Strelkov, A.Van Aerschot, I.Gruic-Sovulj, S.D.Weeks. Partitioning of the Initial Catalytic Steps of Leucyl-Trna Synthetase Is Driven By An Active Site Peptide-Plane Flip. Commun Biol V. 5 883 2022.
ISSN: ESSN 2399-3642
PubMed: 36038645
DOI: 10.1038/S42003-022-03825-8