Zinc in PDB 7nad: State E2 Nucleolar 60S Ribosomal Biogenesis Intermediate - SPB4 Local Refinement Model

Zinc Binding Sites:

The binding sites of Zinc atom in the State E2 Nucleolar 60S Ribosomal Biogenesis Intermediate - SPB4 Local Refinement Model (pdb code 7nad). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the State E2 Nucleolar 60S Ribosomal Biogenesis Intermediate - SPB4 Local Refinement Model, PDB code: 7nad:

Zinc binding site 1 out of 1 in 7nad

Go back to Zinc Binding Sites List in 7nad
Zinc binding site 1 out of 1 in the State E2 Nucleolar 60S Ribosomal Biogenesis Intermediate - SPB4 Local Refinement Model


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of State E2 Nucleolar 60S Ribosomal Biogenesis Intermediate - SPB4 Local Refinement Model within 5.0Å range:
probe atom residue distance (Å) B Occ
g:Zn201

b:23.6
occ:1.00
SG g:CYS81 2.3 6.4 1.0
SG g:CYS84 2.3 5.4 1.0
SG g:CYS47 2.3 5.8 1.0
SG g:CYS44 2.3 6.4 1.0
CB g:CYS44 3.3 6.4 1.0
CB g:CYS84 3.5 5.4 1.0
CB g:CYS47 3.5 5.8 1.0
CB g:CYS81 3.7 6.4 1.0
N g:CYS47 3.7 5.8 1.0
N g:CYS81 3.9 6.4 1.0
CA g:CYS47 4.2 5.8 1.0
OG g:SER49 4.3 6.5 1.0
CB g:ASP46 4.4 5.7 1.0
CA g:CYS81 4.4 6.4 1.0
N g:CYS84 4.6 5.4 1.0
CA g:CYS84 4.6 5.4 1.0
C g:ASP46 4.7 5.7 1.0
CA g:CYS44 4.7 6.4 1.0
N g:ASP46 4.8 5.7 1.0
CA g:ASP46 4.9 5.7 1.0
N g:GLY48 4.9 5.6 1.0
C g:CYS81 4.9 6.4 1.0
C g:CYS47 5.0 5.8 1.0

Reference:

V.E.Cruz, K.Sekulski, N.Peddada, C.Sailer, S.Balasubramanian, C.S.Weirich, F.Stengel, J.P.Erzberger. Sequence-Specific Remodeling of A Topologically Complex Rnp Substrate By SPB4. Nat.Struct.Mol.Biol. V. 29 1228 2022.
ISSN: ESSN 1545-9985
PubMed: 36482249
DOI: 10.1038/S41594-022-00874-9
Page generated: Sat Apr 8 00:57:27 2023

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