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Zinc in PDB 7na9: Crystal Structure of Bont/B-Lc-Jsg-C1

Protein crystallography data

The structure of Crystal Structure of Bont/B-Lc-Jsg-C1, PDB code: 7na9 was solved by K.Lam, R.Jin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 52.60 / 1.76
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 61.417, 97.018, 101.904, 90, 90, 90
R / Rfree (%) 16.7 / 20.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Bont/B-Lc-Jsg-C1 (pdb code 7na9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Bont/B-Lc-Jsg-C1, PDB code: 7na9:

Zinc binding site 1 out of 1 in 7na9

Go back to Zinc Binding Sites List in 7na9
Zinc binding site 1 out of 1 in the Crystal Structure of Bont/B-Lc-Jsg-C1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Bont/B-Lc-Jsg-C1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn503

b:20.8
occ:0.36
OE1 A:GLU268 2.1 20.1 1.0
NE2 A:HIS234 2.2 15.8 1.0
NE2 A:HIS230 2.3 31.0 1.0
O A:HOH649 2.4 40.9 1.0
CD A:GLU268 3.0 20.4 1.0
O A:HOH652 3.0 40.3 1.0
CD2 A:HIS234 3.1 15.7 1.0
CD2 A:HIS230 3.2 33.5 1.0
CE1 A:HIS234 3.2 21.2 1.0
OE2 A:GLU268 3.3 23.8 1.0
O A:HOH628 3.3 28.4 1.0
CE1 A:HIS230 3.4 19.9 1.0
O A:HOH757 3.4 35.8 1.0
O A:HOH831 4.0 19.6 1.0
OH A:TYR373 4.1 26.4 1.0
OE2 A:GLU231 4.1 24.8 1.0
CE2 A:TYR373 4.2 25.1 1.0
CG A:HIS234 4.3 15.2 1.0
ND1 A:HIS234 4.3 15.8 1.0
CG A:HIS230 4.4 22.8 1.0
ND1 A:HIS230 4.4 32.2 1.0
CG A:GLU268 4.4 18.2 1.0
CZ A:TYR373 4.4 24.5 1.0
O A:HOH837 4.6 37.0 1.0
OE1 A:GLU231 4.6 19.9 1.0
O A:HOH755 4.6 34.6 1.0
CD A:GLU231 4.7 22.9 1.0
CG2 A:THR271 4.8 18.8 1.0
CB A:GLU268 4.9 16.3 1.0
O A:HOH951 5.0 28.9 1.0

Reference:

K.Lam, R.Jin. Crystal Structure of Bont/B-Lc-Jsg-C1 To Be Published.
Page generated: Fri Dec 24 10:39:00 2021

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