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Zinc in PDB 7mo4: Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.4 Angstrom

Protein crystallography data

The structure of Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.4 Angstrom, PDB code: 7mo4 was solved by C.J.Bley, S.Nie, G.W.Mobbs, S.Petrovic, A.T.Gres, X.Liu, S.Mukherjee, S.Harvey, F.M.Huber, D.H.Lin, B.Brown, A.W.Tang, E.J.Rundlet, A.R.Correia, S.Chen, S.G.Regmi, T.A.Stevens, C.A.Jette, M.Dasso, A.Patke, A.F.Palazzo, A.A.Kossiakoff, A.Hoelz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.44 / 2.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 67.66, 61.24, 69.75, 90, 104.04, 90
R / Rfree (%) 21.4 / 23.7

Other elements in 7mo4:

The structure of Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.4 Angstrom also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.4 Angstrom (pdb code 7mo4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.4 Angstrom, PDB code: 7mo4:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7mo4

Go back to Zinc Binding Sites List in 7mo4
Zinc binding site 1 out of 2 in the Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.4 Angstrom


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.4 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn901

b:73.3
occ:1.00
SG B:CYS795 2.2 82.5 1.0
SG B:CYS798 2.3 76.0 1.0
SG B:CYS809 2.3 84.4 1.0
SG B:CYS812 2.3 87.1 1.0
HB3 B:CYS795 3.0 107.7 1.0
CB B:CYS795 3.1 88.2 1.0
HB2 B:CYS795 3.1 107.7 1.0
HB3 B:CYS809 3.2 112.9 1.0
CB B:CYS809 3.2 92.5 1.0
HB2 B:CYS809 3.2 112.9 1.0
H B:CYS812 3.2 101.2 1.0
H B:CYS798 3.3 98.7 1.0
HB3 B:CYS798 3.3 96.2 1.0
CB B:CYS798 3.4 78.6 1.0
HB3 B:CYS812 3.4 98.8 1.0
CB B:CYS812 3.5 85.8 1.0
HB2 B:SER814 3.7 110.1 1.0
HB3 B:SER811 3.7 96.6 1.0
HB B:VAL797 3.8 100.3 1.0
N B:CYS798 3.8 80.6 1.0
HB B:VAL800 3.9 108.6 1.0
N B:CYS812 3.9 82.7 1.0
H B:VAL800 4.1 106.0 1.0
H B:SER814 4.1 110.1 1.0
CA B:CYS798 4.2 80.3 1.0
HB2 B:CYS798 4.2 96.2 1.0
CA B:CYS812 4.3 85.5 1.0
HB2 B:CYS812 4.3 98.8 1.0
H B:VAL797 4.4 102.1 1.0
H B:CYS799 4.4 100.3 1.0
HD21 B:ASN802 4.4 121.5 1.0
H B:SER811 4.5 103.0 1.0
CA B:CYS795 4.5 90.2 1.0
H B:THR813 4.6 106.0 1.0
CB B:SER814 4.6 96.7 1.0
CA B:CYS809 4.7 95.3 1.0
C B:CYS798 4.7 79.3 1.0
CB B:VAL797 4.7 82.0 1.0
CB B:SER811 4.7 78.9 1.0
HG B:SER814 4.7 107.8 1.0
N B:CYS799 4.8 82.0 1.0
HH2 A:TRP64 4.8 87.5 1.0
C B:CYS812 4.8 89.9 1.0
C B:VAL797 4.8 80.5 1.0
OG B:SER814 4.8 97.8 1.0
CB B:VAL800 4.8 88.9 1.0
HA B:CYS795 4.9 110.1 1.0
N B:SER814 4.9 95.3 1.0
HG23 B:VAL800 4.9 101.9 1.0
N B:VAL800 4.9 86.7 1.0
HG12 B:VAL797 4.9 97.1 1.0
N B:THR813 4.9 89.5 1.0
HA B:CYS809 5.0 116.3 1.0
C B:SER811 5.0 81.0 1.0

Zinc binding site 2 out of 2 in 7mo4

Go back to Zinc Binding Sites List in 7mo4
Zinc binding site 2 out of 2 in the Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.4 Angstrom


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the ZNF3 of Nucleoporin NUP153 in Complex with Ran-Gdp, Resolution 2.4 Angstrom within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn901

b:129.8
occ:1.00
SG D:CYS812 2.2 137.5 1.0
SG D:CYS798 2.3 120.2 1.0
SG D:CYS795 2.3 124.4 1.0
SG D:CYS809 2.3 150.3 1.0
HB3 D:CYS795 3.1 155.4 1.0
CB D:CYS795 3.1 128.0 1.0
HB2 D:CYS795 3.1 155.4 1.0
H D:CYS812 3.2 176.0 1.0
HB3 D:CYS809 3.2 185.8 1.0
CB D:CYS809 3.2 153.2 1.0
HB2 D:CYS809 3.3 185.8 1.0
H D:CYS798 3.3 141.6 1.0
HB3 D:CYS798 3.3 142.8 1.0
CB D:CYS798 3.4 117.4 1.0
HB3 D:CYS812 3.5 171.1 1.0
CB D:CYS812 3.5 141.0 1.0
HB2 D:SER814 3.8 174.8 1.0
HB3 D:SER811 3.9 164.9 1.0
HB D:VAL797 3.9 145.3 1.0
N D:CYS798 3.9 116.4 1.0
N D:CYS812 3.9 145.1 1.0
HB D:VAL800 4.1 158.7 1.0
H D:VAL800 4.1 153.1 1.0
H D:SER814 4.1 179.9 1.0
CA D:CYS798 4.2 116.9 1.0
HB2 D:CYS798 4.2 142.8 1.0
CA D:CYS812 4.2 143.3 1.0
HB2 D:CYS812 4.3 171.1 1.0
H D:VAL797 4.4 141.8 1.0
H D:CYS799 4.4 143.5 1.0
HG D:SER814 4.5 170.2 1.0
HD21 D:ASN802 4.5 191.2 1.0
H D:SER811 4.5 173.0 1.0
CA D:CYS795 4.5 127.0 1.0
CB D:SER814 4.6 144.1 1.0
C D:CYS798 4.7 116.7 1.0
CA D:CYS809 4.7 154.4 1.0
H D:THR813 4.7 178.6 1.0
C D:CYS812 4.7 145.1 1.0
HG23 D:VAL800 4.7 150.3 1.0
OG D:SER814 4.8 140.2 1.0
N D:CYS799 4.8 118.0 1.0
CB D:VAL797 4.8 119.5 1.0
CB D:SER811 4.8 135.8 1.0
HH2 C:TRP64 4.8 139.3 1.0
HG12 D:VAL797 4.8 142.5 1.0
C D:VAL797 4.9 115.1 1.0
HA D:CYS795 4.9 154.4 1.0
N D:SER814 4.9 148.3 1.0
N D:VAL800 4.9 126.0 1.0
N D:THR813 4.9 147.2 1.0
CB D:VAL800 5.0 130.7 1.0
HA D:CYS809 5.0 187.1 1.0

Reference:

C.J.Bley, S.Nie, G.W.Mobbs, S.Petrovic, A.T.Gres, X.Liu, S.Mukherjee, S.Harvey, F.M.Huber, D.H.Lin, B.Brown, A.W.Tang, E.J.Rundlet, A.R.Correia, S.Chen, S.G.Regmi, T.A.Stevens, C.A.Jette, M.Dasso, A.Patke, A.F.Palazzo, A.A.Kossiakoff, A.Hoelz. Architecture of the Cytoplasmic Face of the Nuclear Pore. Science V. 376 M9129 2022.
ISSN: ESSN 1095-9203
PubMed: 35679405
DOI: 10.1126/SCIENCE.ABM9129
Page generated: Sat Apr 8 00:54:47 2023

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