Zinc in PDB 7mk9: Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused)

Enzymatic activity of Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused)

All present enzymatic activity of Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused):
2.7.7.6;

Other elements in 7mk9:

The structure of Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) (pdb code 7mk9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused), PDB code: 7mk9:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 7mk9

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Zinc binding site 1 out of 8 in the Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1801

b:331.4
occ:0.95
 SG A:CYS110 2.3 242.1 1.0
SG A:CYS167 2.3 293.6 1.0
SG A:CYS107 2.3 250.7 1.0
SG A:CYS148 2.4 294.8 1.0
CB A:CYS110 3.0 242.1 1.0
CB A:CYS148 3.1 294.8 1.0
O A:CYS167 3.1 293.6 1.0
N A:CYS167 3.5 293.6 1.0
CB A:CYS107 3.5 250.7 1.0
CB A:CYS167 3.7 293.6 1.0
C A:CYS167 3.8 293.6 1.0
CA A:CYS167 3.8 293.6 1.0
CA A:CYS110 4.4 242.1 1.0
NE2 A:GLN171 4.5 269.9 1.0
CA A:CYS148 4.5 294.8 1.0
O A:MET108 4.6 249.2 1.0
C A:GLY166 4.7 275.6 1.0
N A:CYS110 4.8 242.1 1.0
N A:GLY166 4.8 275.6 1.0
CA A:CYS107 4.9 250.7 1.0
CA A:GLY166 5.0 275.6 1.0
N A:GLY168 5.0 291.1 1.0

Zinc binding site 2 out of 8 in 7mk9

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Zinc binding site 2 out of 8 in the Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1802

b:251.4
occ:1.00
 O A:CYS67 2.0 231.6 1.0
CB A:CYS67 2.0 231.6 1.0
SG A:CYS77 2.3 203.0 1.0
NE2 A:HIS80 2.3 193.3 1.0
SG A:CYS67 2.3 231.6 1.0
SG A:CYS70 2.4 224.7 1.0
C A:CYS67 2.6 231.6 1.0
CA A:CYS67 2.8 231.6 1.0
CE1 A:HIS80 3.0 193.3 1.0
NE2 A:GLN68 3.3 224.8 1.0
CD2 A:HIS80 3.4 193.3 1.0
CB A:CYS77 3.5 203.0 1.0
CG A:GLN68 3.8 224.8 1.0
N A:GLN68 3.9 224.8 1.0
CB A:CYS70 4.0 224.7 1.0
CD A:GLN68 4.0 224.8 1.0
N A:CYS67 4.0 231.6 1.0
O A:LYS66 4.2 222.0 1.0
ND1 A:HIS80 4.2 193.3 1.0
N A:CYS70 4.3 224.7 1.0
CG A:HIS80 4.4 193.3 1.0
C A:LYS66 4.5 222.0 1.0
N A:GLN71 4.5 226.7 1.0
CA A:CYS70 4.6 224.7 1.0
CA A:CYS77 4.6 203.0 1.0
CA A:GLN68 4.6 224.8 1.0
CB A:GLN68 4.7 224.8 1.0
C A:CYS70 4.7 224.7 1.0
C A:GLN68 4.8 224.8 1.0

Zinc binding site 3 out of 8 in 7mk9

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Zinc binding site 3 out of 8 in the Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1301

b:274.0
occ:1.00
 CB B:CYS1163 2.0 222.0 1.0
SG B:CYS1166 2.3 229.0 1.0
SG B:CYS1163 2.3 222.0 1.0
SG B:CYS1182 2.3 232.6 1.0
CB B:CYS1166 2.5 229.0 1.0
CA B:CYS1163 3.5 222.0 1.0
CB B:CYS1182 3.5 232.6 1.0
CA B:CYS1166 3.7 229.0 1.0
SG B:CYS1185 3.8 50.0 1.0
N B:CYS1166 3.8 229.0 1.0
O B:CYS1163 3.9 222.0 1.0
OG1 B:THR1170 4.0 201.1 1.0
C B:CYS1163 4.1 222.0 1.0
N B:CYS1163 4.1 222.0 1.0
CB B:CYS1185 4.3 50.0 1.0
CG2 B:VAL1171 4.5 195.8 1.0
NZ D:LYS16 4.5 365.3 1.0
C B:CYS1166 4.8 229.0 1.0
N B:GLY1167 4.9 207.7 1.0
CA B:CYS1182 4.9 232.6 1.0
OD1 B:ASN1187 5.0 235.3 1.0

Zinc binding site 4 out of 8 in 7mk9

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Zinc binding site 4 out of 8 in the Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn401

b:384.7
occ:1.00
 SG C:CYS88 2.3 317.1 1.0
SG C:CYS92 2.3 296.5 1.0
SG C:CYS86 2.3 323.1 1.0
SG C:CYS95 2.3 293.4 1.0
CB C:CYS86 3.1 323.1 1.0
CB C:CYS88 3.2 317.1 1.0
CB C:CYS92 3.5 296.5 1.0
CB C:CYS95 3.6 293.4 1.0
N C:CYS92 3.7 296.5 1.0
CA C:CYS92 4.1 296.5 1.0
N C:CYS95 4.2 293.4 1.0
O C:CYS92 4.3 296.5 1.0
CA C:CYS88 4.3 317.1 1.0
N C:CYS88 4.4 317.1 1.0
C C:CYS92 4.5 296.5 1.0
CA C:CYS86 4.5 323.1 1.0
CA C:CYS95 4.5 293.4 1.0
C C:HIS91 4.7 280.2 1.0
CB C:LYS94 4.8 283.8 1.0
C C:LYS94 4.8 283.8 1.0
CA C:HIS91 4.8 280.2 1.0
C C:CYS86 4.9 323.1 1.0
C C:CYS88 5.0 317.1 1.0

Zinc binding site 5 out of 8 in 7mk9

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Zinc binding site 5 out of 8 in the Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn201

b:314.0
occ:1.00
 SG I:CYS32 2.3 262.0 1.0
SG I:CYS29 2.3 273.6 1.0
SG I:CYS7 2.3 276.1 1.0
SG I:CYS10 2.3 275.0 1.0
CB I:CYS7 2.8 276.1 1.0
CB I:CYS29 3.3 273.6 1.0
CB I:CYS32 3.8 262.0 1.0
CB I:CYS10 3.9 275.0 1.0
N I:CYS10 3.9 275.0 1.0
O I:CYS10 4.0 275.0 1.0
N I:CYS32 4.0 262.0 1.0
O I:CYS32 4.2 262.0 1.0
CB I:ASP9 4.2 291.9 1.0
CA I:CYS7 4.3 276.1 1.0
CA I:CYS10 4.3 275.0 1.0
CA I:CYS32 4.3 262.0 1.0
C I:ASP9 4.5 291.9 1.0
C I:CYS10 4.6 275.0 1.0
CB I:THR31 4.6 260.5 1.0
C I:CYS32 4.6 262.0 1.0
CB I:TYR34 4.7 258.1 1.0
CA I:CYS29 4.7 273.6 1.0
CA I:ASP9 4.7 291.9 1.0
ND2 I:ASN12 4.8 260.9 1.0
N I:ASP9 4.8 291.9 1.0
C I:CYS7 4.8 276.1 1.0
OD2 I:ASP9 4.9 291.9 1.0
CB I:ASN12 4.9 260.9 1.0

Zinc binding site 6 out of 8 in 7mk9

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Zinc binding site 6 out of 8 in the Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn202

b:321.3
occ:1.00
 CB I:CYS106 2.0 279.1 1.0
SG I:CYS75 2.3 273.1 1.0
SG I:CYS106 2.3 279.1 1.0
SG I:CYS78 2.3 266.8 1.0
N I:CYS78 2.7 266.8 1.0
CB I:LYS77 2.9 266.5 1.0
CB I:CYS78 3.0 266.8 1.0
C I:LYS77 3.3 266.5 1.0
CB I:CYS75 3.3 273.1 1.0
CA I:LYS77 3.4 266.5 1.0
CA I:CYS78 3.4 266.8 1.0
CA I:CYS106 3.5 279.1 1.0
N I:LYS77 3.6 266.5 1.0
N I:CYS106 4.1 279.1 1.0
CG I:LYS77 4.2 266.5 1.0
O I:CYS75 4.2 273.1 1.0
CE I:LYS77 4.2 266.5 1.0
O I:LYS77 4.3 266.5 1.0
C I:CYS75 4.4 273.1 1.0
C I:CYS78 4.4 266.8 1.0
CA I:CYS75 4.5 273.1 1.0
C I:CYS106 4.5 279.1 1.0
N I:HIS79 4.5 263.9 1.0
OG I:SER105 4.6 269.8 1.0
CD I:LYS77 4.8 266.5 1.0
O I:CYS106 4.8 279.1 1.0
C I:PRO76 4.8 260.8 1.0
SG I:CYS103 4.9 263.6 1.0
CB I:HIS108 4.9 262.1 1.0
N I:PRO76 5.0 260.8 1.0

Zinc binding site 7 out of 8 in 7mk9

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Zinc binding site 7 out of 8 in the Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn101

b:243.1
occ:1.00
 SG J:CYS10 2.3 191.7 1.0
SG J:CYS46 2.3 203.8 1.0
SG J:CYS45 2.3 197.1 1.0
SG J:CYS7 2.3 192.0 1.0
N J:CYS46 2.6 203.8 1.0
CA J:CYS46 3.0 203.8 1.0
C J:CYS45 3.1 197.1 1.0
CB J:CYS46 3.2 203.8 1.0
CB J:CYS7 3.2 192.0 1.0
CB J:CYS10 3.3 191.7 1.0
CB J:CYS45 3.3 197.1 1.0
O J:CYS45 3.6 197.1 1.0
N J:CYS10 3.8 191.7 1.0
CA J:CYS45 3.8 197.1 1.0
CA J:CYS10 4.1 191.7 1.0
N J:GLY11 4.5 180.8 1.0
C J:CYS46 4.5 203.8 1.0
N J:CYS45 4.5 197.1 1.0
CA J:CYS7 4.6 192.0 1.0
C J:CYS10 4.9 191.7 1.0
C J:CYS7 4.9 192.0 1.0
N J:LYS12 4.9 169.7 1.0
CB J:SER9 4.9 179.9 1.0
NE J:ARG43 4.9 190.6 1.0
C J:SER9 4.9 179.9 1.0
O J:CYS7 5.0 192.0 1.0

Zinc binding site 8 out of 8 in 7mk9

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Zinc binding site 8 out of 8 in the Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn201

b:30.0
occ:1.00
 SG L:CYS48 2.3 309.8 1.0
SG L:CYS51 2.3 30.0 1.0
SG L:CYS31 2.3 302.2 1.0
OD1 L:ASP50 2.7 322.9 1.0
CB L:CYS51 2.9 30.0 1.0
CB L:CYS48 3.0 309.8 1.0
CB L:ALA32 3.0 295.0 1.0
SG L:CYS34 3.4 298.6 1.0
N L:CYS51 3.7 313.0 1.0
CG L:ASP50 3.7 322.9 1.0
CB L:CYS31 3.8 302.2 1.0
CA L:CYS51 3.9 313.0 1.0
OD2 L:ASP50 4.0 322.9 1.0
O L:CYS31 4.0 302.2 1.0
C L:CYS31 4.1 302.2 1.0
CA L:ALA32 4.2 295.0 1.0
N L:ALA32 4.3 295.0 1.0
O L:ILE30 4.4 293.1 1.0
CA L:CYS48 4.4 309.8 1.0
CA L:CYS31 4.6 302.2 1.0
CB L:CYS34 4.6 298.6 1.0
OG L:SER36 4.7 300.3 1.0
C L:CYS51 4.7 313.0 1.0
C L:ASP50 4.8 322.9 1.0
C L:CYS48 4.8 309.8 1.0
CB L:SER36 4.8 300.3 1.0
CB L:ASP50 5.0 322.9 1.0

Reference:

C.Yang, K.Murakami. Complex Structure of Trailing Ec of Ec+Ec (Trailing Ec-Focused) To Be Published.
Page generated: Tue Oct 29 23:24:47 2024

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