Zinc in PDB 7m5o: Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna

The binding sites of Zinc atom in the Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna (pdb code 7m5o). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna, PDB code: 7m5o:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Casphi-2 (CAS12J) Bound to Crrna within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn801 b:168.5 occ:1.00 SG A:CYS688 2.2 139.8 1.0 SG A:CYS670 2.3 137.5 1.0 SG A:CYS685 2.4 142.8 1.0 SG A:CYS667 2.4 139.1 1.0 HG A:CYS667 2.6 139.1 1.0 H A:CYS670 3.1 137.5 1.0 HB3 A:CYS670 3.1 137.5 1.0 CB A:CYS670 3.2 137.5 1.0 HB3 A:CYS685 3.3 142.8 1.0 HB3 A:LYS669 3.4 131.5 1.0 CB A:CYS685 3.4 142.8 1.0 N A:CYS670 3.6 137.5 1.0 H A:CYS688 3.6 139.8 1.0 HB2 A:CYS685 3.7 142.8 1.0 CB A:CYS688 3.9 139.8 1.0 CA A:CYS670 3.9 137.5 1.0 OG A:SER687 3.9 135.5 1.0 HG A:SER687 4.1 135.5 1.0 HB2 A:CYS670 4.1 137.5 1.0 O A:CYS670 4.1 137.5 1.0 HB3 A:CYS688 4.2 139.8 1.0 CB A:CYS667 4.2 139.1 1.0 N A:CYS688 4.4 139.8 1.0 HE2 A:PHE683 4.4 135.5 1.0 CB A:LYS669 4.4 131.5 1.0 C A:CYS670 4.4 137.5 1.0 HB2 A:CYS688 4.4 139.8 1.0 HB3 A:CYS667 4.4 139.1 1.0 C A:LYS669 4.5 131.5 1.0 HB2 A:CYS667 4.5 139.1 1.0 O A:CYS688 4.6 139.8 1.0 CA A:CYS688 4.6 139.8 1.0 H A:SER687 4.8 135.5 1.0 HA A:CYS685 4.8 142.8 1.0 HA A:CYS670 4.8 137.5 1.0 CA A:CYS685 4.8 142.8 1.0 HG3 A:LYS669 4.8 131.5 1.0 H A:LYS669 4.8 131.5 1.0 CA A:LYS669 4.9 131.5 1.0 HB2 A:LYS669 4.9 131.5 1.0

P.Pausch, K.M.Soczek, D.A.Herbst, C.A.Tsuchida, B.Al-Shayeb, J.F.Banfield, E.Nogales, J.A.Doudna. Dna Interference States of the Hypercompact Crispr-Casphi Effector Nat.Struct.Mol.Biol. 2021.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-021-00632-3