Zinc in PDB 7k7g: Nucleosome and GAL4 Complex

Zinc Binding Sites:

The binding sites of Zinc atom in the Nucleosome and GAL4 Complex (pdb code 7k7g). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Nucleosome and GAL4 Complex, PDB code: 7k7g:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 7k7g

Go back to Zinc Binding Sites List in 7k7g
Zinc binding site 1 out of 2 in the Nucleosome and GAL4 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Nucleosome and GAL4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn701

b:428.9
occ:1.00
SG M:CYS14 2.3 380.1 1.0
SG M:CYS17 2.3 375.2 1.0
SG M:CYS30 2.5 398.0 1.0
SG M:CYS24 2.8 349.6 1.0
ZN M:ZN702 3.1 428.3 1.0
CB M:ASN32 3.1 413.8 1.0
CB M:CYS30 3.3 398.0 1.0
CB M:CYS14 3.4 380.1 1.0
ND2 M:ASN32 3.7 413.8 1.0
N M:CYS14 3.8 380.1 1.0
CB M:CYS24 3.9 349.6 1.0
CA M:CYS24 4.0 349.6 1.0
CG M:ASN32 4.0 413.8 1.0
NH2 M:ARG26 4.0 339.6 1.0
CB M:CYS17 4.0 375.2 1.0
CA M:CYS14 4.2 380.1 1.0
CA M:ASN32 4.3 413.8 1.0
N M:ASP25 4.3 357.6 1.0
SG M:CYS33 4.4 424.6 1.0
N M:ASN32 4.4 413.8 1.0
O M:LYS23 4.4 334.6 1.0
C M:CYS24 4.7 349.6 1.0
CA M:CYS30 4.7 398.0 1.0
N M:CYS33 4.7 424.6 1.0
N M:CYS17 4.8 375.2 1.0
C M:PRO13 4.9 339.6 1.0
C M:ASN32 4.9 413.8 1.0

Zinc binding site 2 out of 2 in 7k7g

Go back to Zinc Binding Sites List in 7k7g
Zinc binding site 2 out of 2 in the Nucleosome and GAL4 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Nucleosome and GAL4 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn702

b:428.3
occ:1.00
SG M:CYS33 2.3 424.6 1.0
CB M:CYS14 2.3 380.1 1.0
SG M:CYS14 2.3 380.1 1.0
CB M:CYS30 2.5 398.0 1.0
SG M:CYS42 2.9 431.4 1.0
ZN M:ZN701 3.1 428.9 1.0
SG M:CYS30 3.6 398.0 1.0
CA M:CYS30 3.8 398.0 1.0
CB M:CYS33 3.8 424.6 1.0
CA M:CYS14 3.8 380.1 1.0
O M:PRO29 3.9 389.4 1.0
N M:CYS30 4.0 398.0 1.0
CB M:CYS42 4.1 431.4 1.0
C M:PRO29 4.2 389.4 1.0
N M:CYS33 4.3 424.6 1.0
N M:CYS14 4.4 380.1 1.0
NH2 M:ARG26 4.5 339.6 1.0
SG M:CYS17 4.5 375.2 1.0
C M:CYS30 4.6 398.0 1.0
C M:CYS14 4.7 380.1 1.0
CA M:CYS33 4.7 424.6 1.0
O M:CYS30 4.8 398.0 1.0
CB M:ASN32 4.9 413.8 1.0

Reference:

R.Guan, T.Lian, B.R.Zhou, E.He, C.Wu, M.Singleton, Y.Bai. Structural and Dynamic Mechanisms of CBF3-Guided Centromeric Nucleosome Formation. Nat Commun V. 12 1763 2021.
ISSN: ESSN 2041-1723
PubMed: 33741944
DOI: 10.1038/S41467-021-21985-9
Page generated: Sat Apr 3 18:36:53 2021

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