Zinc in PDB 7k1d: Crystal Structure of Human Insulin Degrading Enzyme (Ide) in Complex with Compound BDM_77291

All present enzymatic activity of Crystal Structure of Human Insulin Degrading Enzyme (Ide) in Complex with Compound BDM_77291:
3.4.24.56;

The structure of Crystal Structure of Human Insulin Degrading Enzyme (Ide) in Complex with Compound BDM_77291, PDB code: 7k1d was solved by W.G.Liang, R.Deprez, D.Bosc, W.Tang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.42 / 3.00
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	264.313, 264.313, 90.468, 90, 90, 120
R / Rfree (%)	15.6 / 19.2

The structure of Crystal Structure of Human Insulin Degrading Enzyme (Ide) in Complex with Compound BDM_77291 also contains other interesting chemical elements:

Fluorine

(F)

4 atoms

The binding sites of Zinc atom in the Crystal Structure of Human Insulin Degrading Enzyme (Ide) in Complex with Compound BDM_77291 (pdb code 7k1d). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Human Insulin Degrading Enzyme (Ide) in Complex with Compound BDM_77291, PDB code: 7k1d:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Human Insulin Degrading Enzyme (Ide) in Complex with Compound BDM_77291


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Insulin Degrading Enzyme (Ide) in Complex with Compound BDM_77291 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1101 b:52.7 occ:1.00 O38 A:VQD1102 2.1 48.5 1.0 OE1 A:GLU189 2.2 56.0 1.0 NE2 A:HIS108 2.2 44.4 1.0 NE2 A:HIS112 2.3 66.5 1.0 O01 A:VQD1102 2.7 66.3 1.0 C03 A:VQD1102 2.9 50.8 1.0 CE1 A:HIS108 3.0 47.1 1.0 CD A:GLU189 3.0 55.5 1.0 N02 A:VQD1102 3.1 69.2 1.0 OE2 A:GLU189 3.2 54.9 1.0 CD2 A:HIS112 3.2 57.5 1.0 CE1 A:HIS112 3.3 71.0 1.0 CD2 A:HIS108 3.3 50.7 1.0 OE1 A:GLU111 4.0 70.3 1.0 ND1 A:HIS108 4.2 55.3 1.0 C04 A:VQD1102 4.3 41.4 1.0 CG A:HIS108 4.4 54.3 1.0 ND1 A:HIS112 4.4 58.5 1.0 CG A:HIS112 4.4 52.5 1.0 OH A:TYR831 4.4 71.4 1.0 CG A:GLU189 4.5 54.0 1.0 CE1 A:TYR831 4.5 53.6 1.0 C05 A:VQD1102 4.5 59.0 1.0 CZ A:TYR831 4.8 60.6 1.0 CB A:GLU189 4.9 48.6 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Human Insulin Degrading Enzyme (Ide) in Complex with Compound BDM_77291


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Human Insulin Degrading Enzyme (Ide) in Complex with Compound BDM_77291 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn1101 b:42.5 occ:1.00 OE1 B:GLU189 2.0 39.0 1.0 O38 B:VQD1102 2.1 43.9 1.0 NE2 B:HIS108 2.2 37.4 1.0 NE2 B:HIS112 2.2 43.7 1.0 O01 B:VQD1102 2.7 51.7 1.0 C03 B:VQD1102 2.8 47.8 1.0 CD B:GLU189 2.9 42.7 1.0 N02 B:VQD1102 3.1 65.4 1.0 OE2 B:GLU189 3.1 48.4 1.0 CE1 B:HIS108 3.1 39.6 1.0 CD2 B:HIS112 3.2 41.2 1.0 CD2 B:HIS108 3.2 37.0 1.0 CE1 B:HIS112 3.2 44.5 1.0 OE1 B:GLU111 3.9 51.3 1.0 OH B:TYR831 4.2 49.1 1.0 C04 B:VQD1102 4.3 42.9 1.0 ND1 B:HIS108 4.3 44.7 1.0 CG B:HIS112 4.3 45.4 1.0 ND1 B:HIS112 4.3 49.0 1.0 CG B:HIS108 4.3 37.6 1.0 CG B:GLU189 4.3 38.4 1.0 CE1 B:TYR831 4.4 45.1 1.0 C05 B:VQD1102 4.7 49.1 1.0 CZ B:TYR831 4.7 44.0 1.0 CB B:GLU189 4.8 39.0 1.0

W.G.Liang, R.Deprez, D.Bosc, W.Tang. Crystal Structure of Human Insulin Degrading Enzyme (Ide) in Complex with Compound 2 To Be Published.