Zinc in PDB 7jsn: Structure of the Visual Signaling Complex Between Transducin and Phosphodiesterase 6

All present enzymatic activity of Structure of the Visual Signaling Complex Between Transducin and Phosphodiesterase 6:
3.1.4.35;

The structure of Structure of the Visual Signaling Complex Between Transducin and Phosphodiesterase 6 also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Zinc atom in the Structure of the Visual Signaling Complex Between Transducin and Phosphodiesterase 6 (pdb code 7jsn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Visual Signaling Complex Between Transducin and Phosphodiesterase 6, PDB code: 7jsn:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of the Visual Signaling Complex Between Transducin and Phosphodiesterase 6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Visual Signaling Complex Between Transducin and Phosphodiesterase 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn901 b:60.6 occ:1.00 OD2 A:ASP600 2.0 40.7 1.0 NE2 A:HIS563 2.1 43.5 1.0 NE2 A:HIS599 2.3 40.2 1.0 CD2 A:HIS563 2.9 43.5 1.0 CG A:ASP600 3.0 40.7 1.0 CE1 A:HIS599 3.0 40.2 1.0 HD2 A:HIS563 3.0 43.5 1.0 HE1 A:HIS599 3.1 40.2 1.0 CE1 A:HIS563 3.1 43.5 1.0 OD1 A:ASP720 3.3 48.6 1.0 HE1 A:HIS563 3.4 43.5 1.0 CD2 A:HIS599 3.4 40.2 1.0 OD1 A:ASP600 3.6 40.7 1.0 HD2 A:HIS599 3.7 40.2 1.0 OD2 A:ASP720 3.7 48.6 1.0 CG A:ASP720 3.8 48.6 1.0 HB2 A:ASP600 3.8 40.7 1.0 CB A:ASP600 4.0 40.7 1.0 CG A:HIS563 4.1 43.5 1.0 ND1 A:HIS563 4.2 43.5 1.0 ND1 A:HIS599 4.2 40.2 1.0 HE1 A:HIS559 4.3 44.5 1.0 HB3 A:ASP600 4.4 40.7 1.0 CG A:HIS599 4.4 40.2 1.0 ND1 A:HIS559 4.6 44.5 1.0 MG A:MG902 4.7 42.4 1.0 CE1 A:HIS559 4.8 44.5 1.0 HD1 A:HIS599 4.9 40.2 1.0 HA A:ASP720 4.9 48.6 1.0 HD1 A:HIS563 5.0 43.5 1.0

Zinc binding site 2 out of 2 in the Structure of the Visual Signaling Complex Between Transducin and Phosphodiesterase 6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Visual Signaling Complex Between Transducin and Phosphodiesterase 6 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn901 b:56.5 occ:1.00 OD2 B:ASP598 2.0 44.6 1.0 NE2 B:HIS597 2.1 45.3 1.0 HD2 B:HIS561 2.1 48.4 1.0 NE2 B:HIS561 2.2 48.4 1.0 CD2 B:HIS561 2.4 48.4 1.0 CD2 B:HIS597 2.8 45.3 1.0 HD2 B:HIS597 2.8 45.3 1.0 CG B:ASP598 3.2 44.6 1.0 CE1 B:HIS597 3.2 45.3 1.0 OD1 B:ASP718 3.3 53.8 1.0 CE1 B:HIS561 3.5 48.4 1.0 HE1 B:HIS597 3.6 45.3 1.0 HD2 B:HIS557 3.6 46.0 1.0 HB2 B:ASP598 3.7 44.6 1.0 CG B:HIS561 3.7 48.4 1.0 CB B:ASP598 4.0 44.6 1.0 CG B:HIS597 4.0 45.3 1.0 OD1 B:ASP598 4.1 44.6 1.0 HE1 B:HIS561 4.1 48.4 1.0 HG21 B:VAL565 4.1 49.6 1.0 ND1 B:HIS597 4.2 45.3 1.0 ND1 B:HIS561 4.2 48.4 1.0 HE2 B:HIS557 4.3 46.0 1.0 CG B:ASP718 4.3 53.8 1.0 CD2 B:HIS557 4.4 46.0 1.0 HB3 B:ASP598 4.5 44.6 1.0 MG B:MG902 4.5 69.2 1.0 OD2 B:ASP718 4.5 53.8 1.0 NE2 B:HIS557 4.6 46.0 1.0 HB3 B:HIS561 4.8 48.4 1.0 CB B:HIS561 4.9 48.4 1.0 CG2 B:VAL565 5.0 49.6 1.0

Y.Gao, G.Eskici, S.Ramachandran, F.Poitevin, A.B.Seven, O.Panova, G.Skiniotis, R.A.Cerione. Structure of the Visual Signaling Complex Between Transducin and Phosphodiesterase 6. Mol.Cell V. 80 237 2020.
ISSN: ISSN 1097-2765
PubMed: 33007200
DOI: 10.1016/J.MOLCEL.2020.09.013